Physcomitrium patens (spreading earthmoss): 112277347
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Entry
112277347 CDS
T01041
Name
(RefSeq) uncharacterized protein isoform X1
KO
K06100
symplekin
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112277347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppp03021
]
112277347
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112277347
Transcription machinery [BR:
ppp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112277347
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
112277347
U7-dependent histone pre-mRNA processing factors
112277347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
112277347
NCBI-ProteinID:
XP_024365310
UniProt:
A0A2K1L114
LinkDB
All DBs
Position
2:7287540..7300431
Genome browser
AA seq
1293 aa
AA seq
DB search
MAGIREQAVALLNEVKMTGEASAKVDLLKTLMELVLYRDPLSLLPEFVPYLMEFQTEPGS
PIRKYLAEMIEGIGMKHVDFVPVIVPVLLSLLQDATPAVARRAITSGSNIFRSVLEQVAL
QGVYSGQVERRLVDCWNWMTCFKDAVFSLAFQHGNDGVRLLALKFVETTILLFTPDPNGL
LPNQQSSDGTSRGFNMTWIAGGHPVLDATVLGQEASKNLGLLLNQLRTPEASTLPCLVAI
VIINSLAGIAKKRPSMFGRILPVLLALAPNCEPIQGSQIASVIHELKSAFLNLLKSNQPG
ALPWRDRLVAALRSMNVGDIADQTIRHLERAVRVAERNRTAKDTRVSTKERISPFVSTPQ
VSTIQVIAPAPVDMSLRKRSLPQENGNVQSIDFNEVSGKRSRHDVAPITTQGEATPVIPN
GTGNVMGNTAAYGDHSVAPLISAFATLLAQGERGAASVQILIESLTPDMLAEIVIANMVH
LPSTPPFTPEVNFGANWGLGPIPPSGPPEIPVNPVTSLPIESAPALQPYSSTADLSQDLR
KDPRRLDPRPAVPSDGVTVLLTPKLEVEVNAVPPPVANAQTGNSNLENTLNVSTNSRDPR
AMFHVNANHRSIGQSHIQVKQELKQEPLQEPKQEPIELENRVVSDPSLPSSPPPQSGVST
VPVPSPVITLLPLSAEQQAALSTASLVRIMENHKTIAAAGGADLRIALLARLVAQSYEDT
EVLKVLQKHVLADYQAHKGHELVLHVLYQLFAEHACSDVEQPMSTSLAYEQFLLSLAQGL
RDKISAGDRSLSRLLGEAPVVPMSTLKLVEELCNPPSGAESSKGEHVTAGLTALWSLILQ
RPPTRDTCLKMALKCTVHESDDTRAKAIRLVANKLYPLKFVAQNIEDFATASLLSVVDHQ
SGDTAERDILEGDNTVKTDLMNEDQRVANGVAPMDVAGDEGAQQPTTAAKNTEVLSLSEA
QRCMSLFFALCTKKHALLRQLFQVYGRSSKVVKQAVHRHIPILFRTIGSSSQELLQLIAD
PPAGSENLLLQVLHSLTDGTEPSEELIATVKKLYDVKFQDATYLIPVLSSLSKDEVTPIF
PRLVDLSNEKFQAALARILQGSAHTGPALTPAEVLISLHGIDPHRDSVPLKKVMDACATC
LQQRTVFTQQVLAKVLNQLVEQTPLPLLFMRTVIQAVHSFPSLESFVMEILSRLVSKQIW
KLPKLWTGFLKCAHQTKPKSFHVLLQLPTAQLEDALKGFPSLKEPLAAHADQPSVRPTVP
RSSLVLLGLCQDTPAASNSTSAGQESNTEVSKQ
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atggcggggattcgggagcaagctgtggcactgttaaacgaggttaagatgaccggggaa
gcctcagcgaaagtggatttattaaaaactcttatggagctcgttttgtatcgggatccg
ttgtcgttgcttcctgaatttgtaccgtacttgatggagtttcagacggagcccggtagc
cctattcgtaaatatcttgcagagatgatagaaggaattggtatgaaacatgttgacttc
gtgccagtcatagttcctgttttactctcacttttgcaagatgctacaccagcagttgct
cggcgggctatcactagtggtagcaatatatttcggtctgttctggaacaagttgccctt
cagggtgtctacagcgggcaggttgaacggcggctagtggattgctggaactggatgact
tgttttaaagatgccgtcttttctctagcttttcagcatggaaacgacggggtacgtctg
ctggctctcaagttcgtggagacaacaattttgctatttacacctgaccccaacggctta
ttgccaaaccaacagtcttctgacggtacctcaagagggtttaatatgacatggatagct
ggaggacacccggtcttagatgcgactgtgttgggacaggaggccagtaaaaaccttgga
cttctgttgaaccaattacggactccagaggcatctacgcttccttgcctggttgccatt
gtaattattaacagtctggcaggtattgcaaagaaaaggccatctatgtttgggagaatt
cttccagttttgttagccttagcaccaaattgcgagcctatccagggcagtcaaattgca
agtgttattcacgaattgaaaagcgcgtttcttaatcttctgaaatcaaatcagcctggt
gctctaccgtggcgagatcgattggttgcagctttgaggtccatgaacgtgggggatata
gctgatcaaaccatcagacatctggagagggctgtgcgagtcgcagaacgaaaccgtaca
gcgaaggacactagagtttctactaaggagcgaatctcaccattcgtatcaacacctcaa
gtctctaccatccaggttattgcaccagcaccagtagacatgtcacttcgcaagaggtcc
ctgcctcaagaaaacggaaatgtgcaatcgattgacttcaatgaagtttctggtaaacgg
tcccgacatgatgtagcccccattacaactcaaggtgaagcgacacctgtcattccaaat
gggactggaaacgttatgggaaatactgctgcatatggagatcatagcgtagctcctctt
atatcagcatttgcaactttattagctcaaggagaaagaggagctgcttctgttcagata
ttgatagagagtttgacacctgacatgctcgctgaaattgttattgccaatatggttcat
ctgccaagcactcctccttttactccagaagtgaatttcggcgcaaattggggtctaggt
cctattcccccttcaggtcctccagaaattccagtgaatcctgtaaccagtttaccaata
gagagtgcacctgctctccaaccttattcatctactgcggatctttctcaagatttgcgg
aaggaccctcggcgactggatcctcgaccagcagtgccttctgacggtgtaactgttttg
ttgacaccgaaattggaggtcgaggtgaatgctgttcctccgcctgtcgcaaacgcacaa
acggggaattcgaatttagagaatacgttaaatgtatcaacaaattcaagagatccacgt
gctatgtttcatgtaaatgcaaatcatagatcaattggtcaatctcatatccaagtaaag
caggagctgaagcaggagccactgcaggagccaaagcaggagccaatcgaactagagaat
cgagtcgtctctgatccatctcttccctcgtcaccacctccacagtctggagtatctact
gttccagttccttcaccagtgattacgctactaccactctctgcagaacaacaagcagca
ctgagcacagcttcgttggtgcggataatggagaatcacaagaccattgctgcagctggt
ggtgcagaccttcgaatcgctctactggctcggttagttgctcagtcatacgaagatacc
gaagtcttgaaggttttgcaaaagcatgttctagctgactaccaagctcacaagggtcac
gagttggtgctacacgtactttaccaacttttcgcagagcatgcgtgcagtgatgtggaa
cagccaatgtctacctcacttgcctacgagcagtttttactttcactggcacaaggtttg
agagacaagatttcagctggtgataggtctctaagtcggcttttaggtgaagctcctgtg
gtcccaatgagcacactgaagcttgtggaagagctttgtaatccaccaagtggagcagag
tcatcaaagggtgagcatgttacagcgggactcactgctttgtggagtttgattttgcaa
cgaccacctacacgagacacttgtctaaaaatggctctcaagtgtacagttcacgaatca
gatgacacgcgagcgaaagcaattcgactggtcgctaataagctgtatcccctcaaattt
gtggcgcaaaacattgaagattttgcaactgcaagtcttctttcggtggtagaccatcaa
tctggggataccgcagagagggatatattggagggtgacaatactgtgaaaaccgactta
atgaatgaggatcagcgagtagctaatggggtagctccaatggacgtggccggtgatgaa
ggcgcacaacaacccactacagctgcgaagaacactgaagttttgtcattatctgaagct
caacggtgtatgtctctttttttcgccctgtgtaccaagaagcatgcactgctacgtcag
ctatttcaggtctacggcagatcttcgaaggtggtgaagcaggctgtccacaggcacatt
cctattttattccgcactattggatcttcatcccaggagctccttcagctcattgctgat
cctcctgctggtagcgagaatcttcttttgcaggtacttcatagtctcacggatggtact
gaaccttccgaggagctgattgctactgtgaagaagctttatgatgttaaatttcaggat
gcaacctaccttatacccgtgctttcctcgttgtccaaggatgaggtcactccaatattt
ccacgtttggtagacttgagcaatgagaaattccaggctgccctcgctcgcattttgcag
ggctccgcgcacactggtccagccctgactccagctgaagtattgatttctctgcatggt
attgatccacacagagactctgtccctttgaagaaggtcatggatgcttgtgcaacttgc
cttcaacaacgtactgttttcactcagcaagttctagcgaaggttttaaatcagctggta
gagcaaacaccattgccattgctatttatgcgaacagtaattcaagctgttcattccttc
ccatctctggaaagttttgtcatggaaattttgtctcggttagttagtaagcagatatgg
aaactaccaaagttgtggacgggatttctcaagtgtgctcatcaaacgaagccaaagtct
tttcatgtcttgttgcagttgcctactgctcagttggaagatgcactcaagggtttccct
agtttgaaggagccacttgctgctcatgccgatcaaccaagtgttcggcccactgttccc
cggtcgtctctggttctcttaggtctctgtcaggatactcctgcagcctccaattccact
tctgctggtcaggaatcgaacacagaagtctctaaacaatga
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