Physcomitrium patens (spreading earthmoss): 112277515
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Entry
112277515 CDS
T01041
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
112277515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppp03021
]
112277515
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112277515
Transcription machinery [BR:
ppp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
112277515
RNA polymerase I system
112277515
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
112277515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW2_Spt5
KOW4_SPT5
KOW7_SPT5
KOW
Spt5-NGN
KOW6_SPT51-2
KOW5_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
SH3_KIN17_C
KOW6_SPT5
SPMIP1
Motif
Other DBs
NCBI-GeneID:
112277515
NCBI-ProteinID:
XP_024365720
LinkDB
All DBs
Position
25:complement(5277072..5287042)
Genome browser
AA seq
1078 aa
AA seq
DB search
MAKHYDDDDEAEEVDEEEAEAEEVEEEEEEDGEDLEEEEEEEEEERGRKRKYKGSQFIDD
VAEEDDDEDEEDEAPRKRRQHRRGLEFIDDTAAVASDEDEEEEEEEEDFIERGDVSPGAE
EIRRPHHRAAIRDDAQEDVEGLERYIQQRYGRQEYEKYDEAETTEVEQQALLPSVKDPKL
WMVKCNLGHEREAAICLMQKYIDQDQINQPLLIKSAIALDHLKGYLYIESEKEAYVRQAC
RGMRMIYSQKVTLVPIKEMTDVVSVEKKLVEIDQDTWVRVKIGIYKGDLAKVVDVDHVRQ
RAQIKLIPRIDLQALAAKLEGRDDMKKRPRPAPRFISIQDVKDLRIPVERKRDGSTGELF
DQFGGMMFKDGYLYKYVSLKTIDAKGVEPSLDELQRFQKPGEDGMDALGLPPSAIKNRGK
FMKGDAVVVIEGDLRNLMGVVEKVDDDNVYIVPKYKDLKETLVFKEKQLQKFFKTGDHVK
VIAGNHDGATGMIVKVQNNVITLLSDTTREDLRVFAHNIVESSEVTSGITKLGDYELHDL
VALDHSTVGLIVRVEKDVFQILKGNPERIELLMVKPRDIRRKVFDRKVNTQDRDMNVISL
KDVVRVLDGQFKGKQGPVEHIHRGLLFIHDRHHLENGGYVCIKARQCTALGGSRNGSDRR
NGGSVSNLSSFGLNGNVLQSPRRDTPFGGHGFLVIKIAGGGGGRGGGQLGGGYGGGRGGG
GGRGRREDSIVGRSVKIRLGPFKGYRGRVKDATDSTVRIELESQMKVVTVRREQLSDPGE
SQTGFYSNHRESPRYGAGSETPMHPSRTPMHHPAFMTPMRDPNFATPSLDGMRTPMRDRA
WNPHTPMTPHRGNNWDDANPSTWDIHTSTPQYEPGTPGGRPFEAPTPGNGWSAQTPGASF
SEAGTPTEPVQSYAAPSPYLPGTPGGPPMTPGVPSYLPGTPGGQPMTPGTGGLDPTSPAI
GSGGGFDYEGGWVMPDIVVTIRKIGEETQTAVIREVLPDGSCRVALGPTGDGDILLVGQG
DMDLVLPKKTDKIKIVSGEHRGCTGKLMGIDGADGIVRLDDTLDVRILDMSSLSKIST
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcattacgacgacgatgatgaagccgaggaggtcgatgaggaagaagctgag
gcggaggaagtagaggaggaagaggaggaagatggagaagatttggaggaggaagaggag
gaggaagaggaagagcgaggtcggaagcggaaatacaagggttcacaatttatagatgat
gttgccgaggaagatgatgatgaagatgaggaagacgaagcacccaggaagcggcgacaa
caccgtcggggtttggagttcatagatgacactgcagctgtggctagtgatgaagacgaa
gaggaggaagaggaagaggaagattttattgagcgaggagatgtttcacccggcgccgaa
gaaattcgccggcctcaccatcgcgcagctatccgtgatgacgctcaagaggatgttgag
ggtcttgaaagatatatccagcaacgttatggacggcaggagtacgaaaaatatgatgaa
gccgaaactacggaggtggagcaacaagctttacttccttctgtaaaggatcctaagctg
tggatggtgaagtgcaacctaggacatgagcgtgaagcagcgatttgtctcatgcaaaag
tacatcgatcaagatcaaatcaatcaaccactcttgataaagtcagcaattgctttggac
cacttgaaagggtacctatacatagaatctgagaaagaagcttatgtaagacaggcttgc
agaggaatgcggatgatatacagtcagaaagtcaccttagtacctatcaaagaaatgacg
gatgttgtgtccgttgagaagaagttggtggaaattgatcaagacacttgggttcgggtt
aagattggtatctataaaggtgaccttgctaaggtggtggatgtggaccacgtgagacaa
cgtgctcaaatcaaactcattccaagaattgatcttcaagccttagcggcaaagcttgaa
ggacgtgacgacatgaaaaaaaggccaagacctgcgcctcgatttatcagtatccaagat
gtaaaggatttgaggatacctgttgaacgcaagcgtgatggttctactggggagcttttc
gaccaatttggaggcatgatgttcaaggatggatatctctacaaatatgtctctctgaaa
actattgatgcaaaaggtgttgaaccctcgctcgacgaacttcaaagatttcagaaacca
ggagaagatggaatggatgctcttggtcttccgccttcagcaattaagaatcgtggtaaa
tttatgaaaggagatgctgtggttgtcattgagggtgacttgcgtaatctcatgggagtg
gtggagaaagttgacgatgataatgtgtacattgtgccaaagtacaaggacttgaaggaa
actttagtgttcaaagagaaacagctccagaagtttttcaaaactggtgatcatgttaaa
gtcatagctggcaatcatgacggggctacgggcatgattgtaaaagttcaaaataatgtc
atcactcttctttctgacactacacgtgaagatcttcgtgtcttcgcgcacaatattgtg
gaaagttccgaagtaacttcaggcattacaaagctaggcgattatgagttgcatgatctt
gttgccctcgatcattcaactgttggacttatcgtccgagtggaaaaagatgtttttcaa
attctgaagggcaatcctgaaaggattgaattgttgatggtgaagccaagagatatccgc
agaaaggtgttcgacagaaaagttaatactcaagatcgtgatatgaacgtgattagtctt
aaagatgtcgtgcgagttctggatgggcaatttaagggaaagcaaggtccagttgagcat
atccacaggggactcttatttatacatgaccgacatcatctggaaaacgggggttatgta
tgtatcaaagcacgtcaatgtacagctttaggtggatctcgaaatggaagtgacagaagg
aatggaggatcagtgtcaaatttgagttccttcggtcttaacgggaatgttcttcagtct
ccacgaagagataccccttttggtggtcatggttttctggttatcaaaattgcaggtggt
ggcggtggtcgtggtgggggacagttaggtggtgggtatggaggaggaagaggaggagga
ggaggaaggggaaggagagaggacagtatagtcggacggtctgtgaaaattcgcttggga
ccgtttaagggatatcgtggtcgggttaaagacgctactgattcgactgtgcgaatcgag
ttggagtcacaaatgaaagttgttacggtgagaagagagcagttatcggatcctggtgag
tctcaaacagggttctacagcaaccatcgggagtcacctcgttatggagctggtagtgag
actccaatgcatccttccagaacgccaatgcatcatcctgctttcatgacccccatgcgg
gatcctaactttgctactcctagccttgatggtatgagaaccccaatgcgcgacagggcg
tggaatccccatactccaatgactccacataggggcaacaattgggatgatgctaatcct
agcacttgggatattcacacgtcaactcctcagtatgagcccgggactcctggtggaagg
ccatttgaggcacccacaccagggaatggttggtcagcacaaactcctggtgccagcttt
agtgaagctgggactcctactgaacctgttcaatcatatgccgctccaagcccttatctg
ccaggtacacctggaggccctcctatgacaccaggtgttccatcataccttccaggtact
cctggtgggcaacctatgacacctggaactggagggctggatcctacttcgcctgccatt
ggctctggcggtggttttgattatgaaggtggatgggtgatgcccgatatagtggttacg
attaggaagattggtgaagaaactcaaactgcggtaattcgcgaagtattgccggatggt
tcttgccgagtagctttgggtccaactggtgatggggatattttactcgtcggccaagga
gatatggatctcgttttgcctaaaaagactgacaaaatcaagattgtttctggtgaacat
cgtggatgcacgggaaagttaatgggtattgatggagcagatggcattgtgagattggac
gatacactggatgttagaattttagatatgagtagcctcagcaagatttctacgtag
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