Physcomitrium patens (spreading earthmoss): 112278008
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Entry
112278008 CDS
T01041
Name
(RefSeq) nuclear pore complex protein NUP96
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112278008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112278008
03036 Chromosome and associated proteins [BR:
ppp03036
]
112278008
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112278008
Chromosome and associated proteins [BR:
ppp03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
112278008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
112278008
NCBI-ProteinID:
XP_024366730
UniProt:
A0A2K1IC71
LinkDB
All DBs
Position
26:4487499..4501146
Genome browser
AA seq
1928 aa
AA seq
DB search
MFGSSSPFGASSPSPFGAPAASNPFGATPNPFGSTAQASNPFGAKPFGSTSPGFGAQTGS
SLFGSGTSTGVFGATATPAFGAASTTPAFGAFGQQKPASPFGGFGSTQPQQNPFGSPSFG
QSQAAFGSQPFGSTAPAFGAQSAPAFGSTTTPLFGASSPAFGAATTTPAFGAASTPAFGS
SSVFGQSAPAFGASTTPAFGSTATASPFGASSGSAFGSSFGASSFGGGQQQQQQQQQQRV
GSRVAAYAVTPDADSGVGANAGKFLCISAMPAYKEKQLEELRWEDYQAGDKGGPNPASPQ
PAAGGIFGQPALQTPAASSPFGAAATPTTFGAAATPNPFASTSTANPFGAKPAFGSPSTP
TPAFGQASTPAFGQTSAPAFGTSTFGSSTPAFGAASTPAFGQASSTPAFGSSPSPFGQTS
APAFGSTTFGASSSSSLFGQSSPAFGASSPAFGAASSPAFGAQTSSAFGGGGLFGSSQPA
SSGGLFGASTPAAQPFGASSAPAFGQSQAAFGSNLFGNNTSSPGSLFGQTKAAGLTQSSS
SSLFSGFGAASTGQTPSTFSFPSLQTPQQGATNTFGGTPPAFGQQNTFGQQQATQNVISA
TASPVTNPFGTLPAMPQITIGRSAGSGPSVQYGISSMPVAEKPTQVRVNTLLTPRHITQR
SKVRMHARRYHPKKDSPKVSFFSDGDEAPSTPKADVMFVPRENPRSLFIRQPESSPAIPS
AAKDAVDVGEIATPVQKDGSQDEMRNEVGGDPVPFSFPESPHNNWRSPDGVNGNGFVGTP
AASQAKASERGASKQVSKSNGLREEHSHRGNGYISITGHRAGEAAIAYEHGADIEALMPK
LRHSDYFTDPKVQELAALERADIGYCRRVKDFVVGRKGYGEIKFLGETDVRRLDLENIVQ
FNKCEVLVYMDETKKPPVGQGLNKAAEVTLLNVKCIDKKTGQHYVEGVEVEKFQKRLRKK
TEEQGAEFLGYDGAKGEWRFRVKHFSRYGLDFESDEEDGAEGPGEGAIVVAGTYDMEGVE
QGVMHDADDSMFESPMKNFDAIPEPGVGMEDEVGDDLIDASYFTAPQAALPHSLPAHLHL
DPVKMQQMRALFFAEGEEAEDIAPPGAYGRWQSRPPAPSPAGMSSGVHGSQSFKTPQKVG
VGEDVDGRPAWPQRSSPWKGTPAKQMRVSPLTSWKRSPAYSALEEGMSGRQTAIMDESPS
RSPLLALTMSGERERSGMKRSRGSGFLLDPTEKSGAMAFGRSDHIADAALFLGCSFRVGW
GPNGVFYHSSTPVGPGGTKNGLSSCIQVERVALDRTVRDDGGVVKDELVEMQFVSPLSLH
MSMSRVVDNASDSAARCLRLRTLVCSRTDLPGVCGEYEDLVQKQHEVVGVGEADLVVLRH
QRMVWQLINVLFSETASPAEAEDVDENGEDADVEKSSMQAADVSAEVLMRRAGFSCWLQE
SVGHLVQRDLEHLEGNKYLKEIFILLTGRQLEDAVERALEHGDVRLSTLLCQAGGPVGMR
GDVAAQLEVWGAEGLDESLIETDRMSIFQLLAGDLKGALGGANVDWKRFMGLVMWYQLSP
DTDLPCVIETFEELLEKHHAPNPEPKYVEERVSVYDTQLEARGYDTAYYLMLLHAKKAKG
EVGMRKMLSASASTFDRLDHRLAWHQQGILHAIRMLEGEQLHDVHMNFASQLLSVGLCHW
AVYVVLHMPKSEQHPGLHEKVVKEILNQYCETWSSSETQQQFLEEDLGVPTEWLHEALAL
YWRYCRNDRKELEHLIKSCQWRNAHSLFVATVAASLLLNSEYAEIWQFASQLEGHLTEVE
DWDLGAGIYIEFLTLKSSFKDTSNVVEGLESLEERSSACGAFFERLKESQAMWKSKSSIE
ARAAYSKMADEISLLLLEETKAQALDVSAEMKMFDIVLDAPMPEDVRMCRLQGAVAAFAK
LVSEEILV
NT seq
5787 nt
NT seq
+upstream
nt +downstream
nt
atgttcggatccagcagccccttcggggcatcaagtccgagtccttttggtgcaccggcc
gcttccaacccgttcggtgcgactccgaacccatttggaagcactgcccaagcaagcaat
ccgttcggtgccaagccattcggcagcacgagcccgggtttcggagcgcagacagggagc
tctctgttcgggagcggcacgtcgacgggcgtttttggagcgactgcgacaccggcgttt
ggggctgcgtcaacaactcctgcattcggggcgtttggtcaacaaaagcctgcctcaccg
tttggcggattcggttccactcaacctcagcagaatccgttcgggtccccgtcttttgga
cagtcgcaggcagcgttcgggagccaaccgtttggatccacagcgccagctttcggtgcg
cagtcggcccctgcgtttggaagcacgaccaccccactgttcggggcgtcgagtccagca
tttggggcggcgacgacaactccagcttttggtgcggcatcgactcctgctttcggaagc
agttcggtgttcgggcagagtgcgcctgcgtttggggcgagcacgacgcctgccttcggg
agcacagcgacggcatcaccattcggggcttcctctgggagtgcatttggaagcagcttc
ggggcatcgagttttggaggtgggcagcagcagcagcagcagcagcaacagcagcgtgtg
ggaagcagagtggcagcgtacgctgtgacccctgatgcggactccggggttggggcgaat
gccgggaagtttttgtgtatatctgctatgccggcttacaaagagaagcagctagaggaa
ttgaggtgggaggattatcaagcaggcgataaaggcgggccgaacccagctagcccccag
cctgctgctggaggcatctttggtcaaccagcactgcagactccagcggcatctagcccg
tttggggctgcggcgacgccgacgaccttcggggctgccgccacccctaatccgttcgca
tcaacttccacggcgaatccgtttggcgcgaaaccggcgtttggaagtcccagcaccccc
actcctgcgtttgggcaagcttcaacgcctgcatttgggcagacttcagcgccagcattc
ggcacaagcacgttcggttcgagcacgcctgcttttggagcggcgtcgacgccagcattc
gggcaggcgagctcgaccccagcatttgggtcgtcgccatctccgtttgggcagacatcg
gcacctgcgttcgggagcacaaccttcggagcatcatcatcatcttcattgttcgggcag
agcagtcccgcatttggggcatcttcacctgcatttggagcggcgtccagcccggcgttc
ggtgcgcagacatcgtccgcattcggagggggcgggttgtttgggagcagtcagccagcg
agcagcggagggttgtttggagcatccactcctgcggctcagccgtttggggcaagttct
gctccggcgtttgggcaaagtcaggcagcattcgggtccaacttgtttggcaacaacaca
agcagcccaggttccttgtttggtcaaacaaaggcggcggggttgacacagtcctcgtca
tcgtctttgttcagtgggtttggtgcagcttctaccggacaaactcctagtacatttagc
ttcccaagcttgcaaaccccgcagcaaggggcgaccaacacctttggcggtaccccgccc
gcatttggtcagcagaatacattcgggcaacagcaagctactcaaaacgttatctcggcc
acagctagcccggtaaccaatccctttgggacactacctgccatgccccagataacaatc
ggccgaagcgccggttctggtccgtctgtccagtatgggatatcgagtatgccggtagcc
gagaaaccgactcaagtgcgtgtgaacacattgttgactccccggcatatcacgcagcgg
tcaaaggtgcgcatgcacgcacgacgctaccatcctaagaaggatagcccaaaggtgtcg
ttcttcagtgatggtgacgaagccccctcaaccccgaaagcagatgtgatgtttgttcct
cgagagaatccgcgttctctgttcattcgacagccggaatcgtctcctgcgattccatct
gcggcgaaggacgcagtggatgttggagagatagccacacccgtgcagaaggatggctcc
caggatgaaatgaggaacgaagtgggtggcgatcctgttccgttttcgtttcctgaaagt
ccacacaataactggagaagcccagacggcgtgaatgggaatggattcgtgggaactcca
gcagcatctcaggcgaaggccagtgagagaggggcctcgaaacaggtgtcgaaaagcaac
gggttgcgggaggagcacagtcacagaggaaatggctacatttcgatcactggtcatcgt
gccggtgaagctgcaatcgcgtacgagcacggtgcggacatagaagctttgatgccgaag
ttacggcactcggactatttcacggatccaaaggtgcaggagctggcggcgctggagcgt
gcggatattgggtattgtcgcagagtgaaggacttcgttgttgggcgtaagggttacggg
gagataaagtttttgggcgagacggatgtgcgacgcctggatctggagaacatagtgcag
ttcaacaagtgcgaggtgctggtgtacatggacgagacgaagaagccgccggtagggcaa
ggcttgaacaaggcagcggaggtgacgttgctgaacgtgaaatgcatagacaagaagacg
gggcagcattacgtcgagggagtggaggtggagaagtttcagaagcggttgaggaagaag
acagaggagcagggggcagagttcttagggtacgatggggcgaagggagagtggaggttt
cgagtgaagcatttcagtcgatatggactggactttgagtcggacgaggaggatggggcc
gaagggccaggagagggcgccattgtggttgcaggaacgtacgacatggagggtgttgag
caaggtgtgatgcacgatgcggatgattccatgtttgaatctcctatgaagaattttgat
gcgattccggaacctggagtgggcatggaggatgaggtcggggacgacctgattgatgcg
tcctatttcacggctccacaggcagcacttccgcactccctgcccgcacaccttcacctt
gatcccgtgaaaatgcaacaaatgcgagcccttttctttgccgaaggtgaggaggcggaa
gatatcgcaccacccggggcttacgggcgctggcagtcacgtcctccagcgccatctccc
gccggtatgagctcgggcgtgcatggtagtcagtcgttcaaaacacctcagaaagttggc
gttggtgaagatgtggacgggcgtccagcttggccgcaacggtcatctccttggaaggga
acccctgcgaagcagatgcgagtttctcctcttacgtcttggaaacgatcacctgcttat
tctgctctggaggaggggatgtcgggccgtcagacggcgatcatggatgaatctccttcc
aggtccccactgttggcgttgacaatgagtggagaacgcgagcggtcaggcatgaaaaga
tcacgtggcagcggctttttgctggatccgacggagaagtccggtgcaatggctttcggg
aggtcggaccacattgcagacgctgcgctgttcttgggttgctcgttccgtgtaggatgg
ggtccgaatggagtgttctatcacagttcgacgccggttgggccagggggaacgaagaat
gggttgtcttcatgcattcaggtggaaagagtggcgctggatcggacagtgcgggatgac
ggaggagttgtgaaagacgagctggtggaaatgcagttcgtgtcaccgttgtcgcttcac
atgtccatgagccgggtggtggacaatgcctcagattccgccgcgaggtgtctccggctg
cgaaccttagtgtgcagcaggactgatttgcccggtgtatgcggtgagtacgaagacctg
gtgcagaaacagcacgaggtggtgggagttggagaggcagacctggttgttctgagacat
cagcggatggtgtggcagttgatcaacgttcttttctcggagacggcaagtccggcggaa
gcagaggatgtggacgagaatggggaggatgcagatgttgaaaagagttcaatgcaggcg
gcagatgtgtctgctgaagtgctaatgcgccgggctgggttcagctgctggctgcaggag
agcgtaggtcacctggtgcaacgagacttggagcatctggaaggaaataagtatttgaag
gagatattcatcctcctgacagggcgacaattggaggatgctgttgagagggctctagaa
catggtgacgttcggctgtccacgctgctatgccaggctggtggtccagttgggatgcga
ggtgatgttgcagcgcaactggaggtttggggtgcagagggtctggacgagtcgctcatc
gagacggatcgaatgtcgatctttcaactccttgcaggtgacttgaagggggctcttggc
ggggccaacgtggattggaagcggtttatgggtctcgtgatgtggtatcaattgagcccc
gacacagatctgccgtgcgtgattgagacgttcgaggaactgctggagaagcatcacgcc
ccaaacccagagccaaagtacgtggaggaaagagtgtcggtgtacgacacccaactggag
gcccgtggttacgacacggcgtactatttgatgcttttgcatgcaaagaaggcgaaagga
gaggtcggtatgaggaaaatgttgtctgcgtctgcatcgacctttgacagactggaccat
aggctggcatggcatcaacaagggattcttcatgccatccgcatgttggaaggcgagcag
ctacacgacgtgcacatgaacttcgcgagtcagctgctgtcggtgggtctgtgccactgg
gctgtgtacgtcgttcttcatatgccgaaatctgaacaacacccaggattgcacgagaag
gttgtgaaagagattttgaatcagtactgtgaaacgtggagctcttcagagacacaacag
cagtttctggaagaggacctgggggttcctacggagtggctacatgaggccttggcattg
tactggcgttattgtcgcaacgacaggaaggaactggagcatctgatcaagagctgccag
tggcggaacgcgcactcgctattcgtggcaaccgtcgcggcgtcgctacttctgaattcg
gagtatgctgagatatggcagtttgcgagccagttggaagggcatctgacggaggtggag
gactgggatctaggagcaggcatatacatcgagttcttgacgctgaaatccagcttcaaa
gacacgtcgaatgtagtggaggggctggagagtttggaagagaggagctcagcttgtggg
gcgttcttcgagcggctgaaggagtcgcaagcaatgtggaagtcgaagagttcgatcgag
gccagggcggcttattcaaagatggcggacgagatttcgttgttgttgttggaggaaaca
aaagcacaggcgttggacgtgagcgcggagatgaagatgtttgacattgttctggatgct
cccatgcccgaggacgtgcgcatgtgtcgtctgcaaggagctgtggcagcgttcgcgaaa
ttggtttccgaggaaattctggtgtga
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