Physcomitrium patens (spreading earthmoss): 112278281
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Entry
112278281 CDS
T01041
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018
RNA degradation
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112278281
09123 Folding, sorting and degradation
03018 RNA degradation
112278281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112278281
03041 Spliceosome [BR:
ppp03041
]
112278281
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112278281
mRNA degradation factors
5'-3' decay
Lsm complex
112278281
Spliceosome [BR:
ppp03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
112278281
Complex C
U2 snRNP components
112278281
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
112278281
NCBI-ProteinID:
XP_024367304
LinkDB
All DBs
Position
2:12655417..12656771
Genome browser
AA seq
93 aa
AA seq
DB search
MLFFSYFKELVGKEVIVELKNDLAISGILHSVDQYLNIKLENTRVVDDTKYPHMLSVKNC
FIRGSVVRYVQLPPDGVDVDILHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgcttttcttttcatatttcaaggagctggtcggcaaggaggtgattgtagagctcaaa
aatgacttggccatcagtggtatcctgcactcggttgatcaatacctcaatatcaaatta
gagaatacgcgtgtagttgacgatacaaaatatcctcacatgctttccgttaagaactgc
ttcatccgaggttcggtggtcagatatgtgcaactcccacctgatggtgtggatgttgat
attctgcatgatgcgacaaggagggaggctcgtggtggataa
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