Physcomitrium patens (spreading earthmoss): 112278327
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Entry
112278327 CDS
T01041
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 16
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppp03009
]
112278327
Enzymes [BR:
ppp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112278327
Ribosome biogenesis [BR:
ppp03009
]
Eukaryotic type
Pre-60S particles
Helicases
112278327
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
112278327
NCBI-ProteinID:
XP_024367407
UniProt:
A0A7I3ZGN0
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Position
27:794023..796381
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AA seq
639 aa
AA seq
DB search
MERGDGESGEEMQERLSTIAELKLAAEGGQAAHPGGTKGPHDDDEEEDVGFEEMGLDARL
LRALSKKGLSYPTPVQAKAMPLILEGKDVVARAKTGSGKTLSYLLPLVHKLLAEGGSKKG
PRAMVLVPTRELCQQVYDEATSLAEYCGATLRVVQLATTMSTATMKMSLARVPDILVATP
ARIAACISQNVIQPAVLEESLAMLVLDEADLLFSYGYEEDLRSLAVYVPRKCQCLLMSAT
ASPDVDKLKKLVLHNPVTLTLTEEVDGSGDTSVVPKSVQQFSVHCKSKDKLLYMLSILKY
DLIQKKAIIFVNTIDTGFRLKLFLEQFGIKSAVLNGELPQNSRLHILQQFNVGLFEHLIA
TDDGKSLQPVSSTSKESSSTKDSEAEPVESKSSKKAVRDTEFGVVRGIDFKNVRTVVNYD
MPETVAGYIHRIGRTGRAGNAGISLSLVPPEDEEILKQIKVELSGVDEGQQNNKALISPF
PLLSKTAVESLRYRAEDVMRSVTKIAVREARAKELRIEILNSERLKAHFEDNPTDLELLK
HDKVLSKVAPAAHLKTVPEYLRDPTTEAASRAVNLARAAMNLAQSSFVKRKNKRVRVQDA
PTAFTKSAKRLKRDGRKGGKSEDGKSRSRNASKHKRRKR
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggagaggggcgatggcgagagtggggaggaaatgcaggagaggctgagtaccatcgcg
gagcttaagctggccgctgaaggaggccaggcggcgcacccggggggcacgaaggggcct
cacgatgacgacgaggaggaagacgtggggtttgaggagatgggactcgacgctcggctg
ctgcgagcgctctcgaaaaagggattatcatatcctactcctgtgcaggccaaagccatg
cctctcatccttgaaggtaaggatgtagttgctcgggccaagactggctccgggaagacg
ttgtcgtatttgttgccgttggtgcacaagctgcttgcggaaggcggttcgaagaaaggg
cctcgtgcaatggtgctcgtgcctacacgggagctttgccagcaggtgtacgacgaggcg
acttcgttggcggaatattgcggtgccacgcttagggtggtgcaattggcgaccactatg
tcgaccgcgactatgaaaatgtcgttggccagggtgcctgacattttggttgcgacgcca
gcccgaatcgctgcttgcatcagccaaaacgtgatacaacccgctgtgcttgaggagtcc
ttggcgatgctcgtgttggatgaggcggacttgttgttttcgtatggctatgaagaggat
ttgcggagccttgctgtatatgttcctcggaagtgccagtgtttgcttatgtctgccacc
gcctctccggatgtggataagttgaagaagttggttcttcataatcctgttactctcaca
ctcaccgaggaggtggatggctctggtgataccagcgttgtccctaagtcggttcaacaa
ttttcagttcattgcaagagtaaggacaagctgctgtatatgttatcaattctgaagtac
gacctcattcaaaagaaggctatcatatttgtgaacacgattgatacgggatttaggctg
aaactttttttggagcagtttggaataaagtctgctgtcttgaacggagagctaccacag
aactcccgtctgcacatacttcagcagttcaatgttggtttatttgagcacttgatagct
actgatgatgggaagtcccttcaacccgttagctctacaagcaaggaaagtagcagtact
aaggattctgaggcagagccagtggagtcgaagtcgtccaagaaagctgttcgcgacact
gaatttggagtagttagaggtatcgactttaaaaacgtgcgcacagtagtaaattatgat
atgcctgaaactgtagctggatacatccatcgtattgggcgaactgggcgcgcaggaaat
gccggtatatccctttcccttgttcctcctgaagatgaggaaattctgaagcaaatcaag
gttgagttaagtggggttgatgaaggccaacaaaataacaaagcgctcatttctcctttt
cctttattgtcaaaaactgctgtagagtccctgcgttacagagcagaggatgttatgagg
agtgtcacgaaaattgctgttagggaagctcgtgccaaggagttgcgaatagagatatta
aattctgagcgcttgaaagctcattttgaggacaacccaaccgatttggagttattgaaa
catgacaaggttttgagtaaggtagcgcctgcagcacatttgaaaaccgtaccagaatat
ttgcgagatccaacaaccgaagcagccagccgggctgtcaatttagcaagagcagcaatg
aatcttgcccaatcaagcttcgtcaagaggaagaacaaaagagtgcgcgttcaagatgct
cctaccgccttcacgaagagtgcaaagaggctgaagagggatggcaggaaaggaggcaaa
agtgaagatgggaagagtagatctcggaatgctagcaagcacaaaagacgaaagaggtag
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