Physcomitrium patens (spreading earthmoss): 112278580
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Entry
112278580 CDS
T01041
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112278580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112278580
03036 Chromosome and associated proteins [BR:
ppp03036
]
112278580
Enzymes [BR:
ppp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112278580
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
112278580
mRNA degradation factors
5'-3' decay
Decapping complex
112278580
Chromosome and associated proteins [BR:
ppp03036
]
Eukaryotic type
Gene silencing
piRNA pathway
112278580
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
DS
Motif
Other DBs
NCBI-GeneID:
112278580
NCBI-ProteinID:
XP_024367950
LinkDB
All DBs
Position
Unknown
AA seq
448 aa
AA seq
DB search
MMATSRAGPAPTAPKASSSSNVSRHNSSNSGNILSSNNNSSVNNNNSQDWKAQLKLPPPD
ARYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKN
GTGKTAAFCIPAIEKIDQNKNAVQVLLLVPTRELALQTSQVCKELAKHLNIQIMVTTGGT
SLRDDIMRLYQPVHLLVGTPGRVLDLANKGVCNLKECTMLVMDEADKLLSPEFQPLVEQL
IGFLPENRQILLYSATFPVTVKSFKDRFLRKPYVINLMDELTLKGITQYYAFVEERQKVH
CLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQSHRNRVFHDFRNG
ACRNLVSSDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDR
FNLYRIEQELGTEIKPIPPQIDRGIYCR
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgatggccacttctagggccgggcctgctccgacagctcccaaagcctcctcatcgtca
aatgtttctaggcataacagcagtaacagcggcaatatcctcagcagcaacaacaacagc
agcgtcaacaacaacaattcgcaagactggaaagcacaactcaagctaccacctccagat
gctcgatacaagaccgaggatgtaactgccacgaagggtaatgaatttgaggactacttc
ctcaagcgtgagcttttgatgggtatctatgagaagggatttgaacgaccttctcctatt
caagaagaaagtataccgattgctttgacaggaagtgatattcttgcacgagcaaagaat
ggcacagggaaaactgcagctttttgcattcctgcaattgagaaaattgaccagaataag
aatgcagttcaagttttgcttttagtaccgacaagggagctcgctttgcaaacttctcaa
gtgtgcaaagagctggctaaacatttgaacatacaaataatggtaaccacgggaggtaca
agtcttcgtgatgacatcatgcgcctgtatcagccagttcatctgttggtaggtacacct
ggccgtgtcctagatcttgccaacaagggagtctgcaacctcaaagaatgtactatgttg
gtgatggacgaagctgacaaacttctctcgccagagttccagcctcttgtggagcagttg
atcggtttcctgcctgagaaccgccaaattttgttatattctgctacatttccagtcaca
gttaagtcattcaaagacagattcttgcggaaaccgtacgtaatcaatctcatggatgag
ctgaccttgaagggtatcacccagtactatgcgtttgtggaagaaaggcagaaagtccac
tgtctgaacactttgttttccaagttgcaaattaatcagtcgatcatcttctgcaattca
gtgaaccgagtggaattactggccaagaagatcactgaacttggatattcttgtttctac
atccatgcgaagatgttacagtcacatcgtaacagagtttttcacgatttcaggaatgga
gcttgccgaaatctcgtctcctcagatctgtttacaagaggaattgacattcaggctgtg
aatgttgtcattaattttgacttcccgaaaaattctgagacgtatcttcacagagtcggc
cgttcagggaggttcggtcatctcgggttggcggtgaaccttatcacctatgaagaccgg
tttaacttgtaccgaatcgaacaagagctcggcacagagatcaaaccgattcctcctcaa
atcgaccgcggtatatattgccgctaa
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