Physcomitrium patens (spreading earthmoss): 112278897
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Entry
112278897 CDS
T01041
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03013
Nucleocytoplasmic transport
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112278897
09122 Translation
03013 Nucleocytoplasmic transport
112278897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112278897
03041 Spliceosome [BR:
ppp03041
]
112278897
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
112278897
Spliceosome [BR:
ppp03041
]
Complex C
Other components
EJC/TREX
112278897
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112278897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Trypan_PARP
Motif
Other DBs
NCBI-GeneID:
112278897
NCBI-ProteinID:
XP_024368552
UniProt:
A0A2K1L077
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Position
2:complement(3046947..3049874)
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AA seq
659 aa
AA seq
DB search
MEIQDSVAAACHADRQRLLEVFRVAIAKPLPASQTAVATMVEAVKPQKQTVLVQDENQLL
ENGLRTLLEELVGAAVANGKSVMQYGRAEGPEDDGNGLLTRLLDIVLYLCEKGNVEGGMI
FQLLEDLTEVSTIKDCKEVFGYIEGKQETLGKSELFSRGKLVMLRTCNQLLRRLSKTNDV
VFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKEPPGDSPAIDFTFYKTFWSLQE
YFSNPTTLTHPSKWQTFSSNLGIVLETFEMQPIGEEDESLSLDGDDDSTFNIKYLTSSNL
MSLELKDPGFRRHVLVQCLIIFDYMKTPGKAEKDGPREGVREELKVHEDRVKKLLRTTPP
KGREFLASIEHILERDKNWVWWKRDGCIPFERFVQEKKIPSDPPKRRPRWRLGNRELSRL
WKWSDDNPNAITHAKRVKMPPLAEYFKPLAEDMDPEAGIEEEYHHKNNKVYCWKGLRFAA
RQDLDALSRYSDMKIMGVVPPDLLTPEVRSSLYKPTDRPKAKGVKKDEEYTPNLTQTEDA
SGSAPTSVSLMELDATTLARDPEEATAMDADGPAVADVEPEADPEPEAEAEPEPEPEPVV
EPVPLTDLSDAKPETVQTPVEAEPSSSKVVSEPPPVGNQSPSPLKSEARSGKKRAHPDD
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggaaatccaagattctgttgcagctgcttgccatgctgaccgacagcgcctgcttgag
gtctttcgagttgccatcgccaagcctttgcctgcatctcagactgcagttgctaccatg
gttgaagccgtgaaaccccaaaagcagactgttctagtacaggacgagaaccagctcttg
gagaatggcttgagaacccttcttgaagagcttgtcggtgcagcagttgcaaatggcaag
tcggtcatgcaatatggtcgagcagagggtcccgaagatgatgggaatggtcttctcaca
agacttcttgacattgtcttgtacttgtgtgagaaaggcaatgtcgaagggggcatgatt
ttccaattacttgaggatctaacagaggtttccactattaaggattgtaaggaagttttt
ggatacatagaggggaagcaagagactcttggaaagtcggagcttttcagtaggggcaag
cttgttatgttacggacttgcaaccagctccttcgccggttgtccaagacaaatgatgtc
gtcttttgtggcaggatcttaatgtttctggctcattttttccccctctctgagagatcg
gccgtgaacattaaaggagtatttaacacctcgaatgaaaccaagtacgagaaagagccg
cctggggatagtccagccattgattttacgttctacaaaaccttctggagccttcaagaa
tacttctccaaccctactaccctaactcacccctcaaagtggcagaccttttcttcaaat
ttaggaatagtgctggagacctttgaaatgcagcctataggtgaggaagacgaaagctta
agtctagatggcgatgatgactcaacattcaacattaagtaccttacgagcagtaatctc
atgagcttggaactgaaggaccctggtttccgtaggcatgtcttagttcagtgtctaatt
atatttgattacatgaagactcctggaaaggcagagaaagatgggccacgggagggtgtt
cgtgaggagctcaaggtgcatgaagatcgtgtgaagaagctgctgaggacaactcctccg
aagggaagagagtttcttgcttccattgagcacattcttgagcgcgacaaaaattgggtc
tggtggaagcgtgatgggtgtattccgttcgagcgttttgtgcaggagaagaaaatacct
tcagaccctccaaagagaagacctagatggcgacttggaaatagagagctttctcgcctt
tggaagtggtctgatgataatcccaacgccattactcatgccaaaagagtcaaaatgcct
cccttggccgagtacttcaagcctcttgctgaagatatggaccctgaagcaggaatagag
gaagagtaccatcacaagaataacaaggtctactgctggaagggccttagatttgctgca
agacaagatctcgatgcattgtcaaggtactcggacatgaaaatcatgggtgtcgtacct
ccagatctcctcacccctgaggtgcggagttcactttacaagcctacagaccgacctaag
gcaaagggggtgaaaaaagatgaagaatacactcccaatcttactcagacggaggatgca
tcaggaagtgcacccaccagtgtgagcttgatggagttggatgccacgacgcttgctcga
gatccagaggaagctactgctatggacgcagatggtccggcagtagcagacgtagagcct
gaagcagacccagaaccggaagcggaagcggagccagagccagaaccggagccggtggta
gaaccggtgccactaactgatctgtcagacgcaaaaccagaaacagttcaaacgccggta
gaagctgaaccttcttcatctaaagtagtctccgaacctccgccagtaggaaatcaatct
ccaagtcctctaaagtcagaagctagaagtggtaaaaaaagggctcaccctgacgactaa
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