Physcomitrium patens (spreading earthmoss): 112278919
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Entry
112278919 CDS
T01041
Name
(RefSeq) endoribonuclease Dicer homolog 1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ppp03036
]
112278919
Chromosome and associated proteins [BR:
ppp03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
112278919
microRNA pathway
RISC loading complex
112278919
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
dsrm
Helicase_C
PAZ
DND1_DSRM
DEAD
ResIII
Dicer_dsRBD
Big_7
Cas3-like_C_2
Dicer_PBD
Motif
Other DBs
NCBI-GeneID:
112278919
NCBI-ProteinID:
XP_024368603
UniProt:
A0A2K1L1P6
LinkDB
All DBs
Position
2:10759478..10770872
Genome browser
AA seq
1866 aa
AA seq
DB search
MERTGERRGETRGRGAYSEEVYERGKRSREDDGRDDWRGGGGVKRSVRVGERGGFRSGGD
FRSMSRSRSRSREIERERVGKEAEDGERKGERRRRSSFEYDSDDWRTEKRRRYHRELDSS
RHYHGSRGGRDRQWIGRVDYDRRERFVAPSRDRDREGERSHVGKERIKDGVEDSKVELEN
GQNGDNEEEEKARTYQLEVLAQAKMKNTIAFLETGAGKTLIAVLLMKHKYQVLREQGRRM
LAVFLVPKVPLVYQQAEVIRNGTNFVVGHYCGEMGQDFWDARRWQREFDTRDIFVMTAQI
LLNILRHSIVRMEAIHLLILDECHHAVKKHPYSLVMSEFYHVTPKDKRPCVFGMTASPVN
LKGVSNQEDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEIMVLYDKPALLFSLREE
IKLMESTVEEAANASVRRSKWKFMGARDAGAKEELRLVYGVAERTESDGAASLSQKLRAI
IYALDELGQWCAYKVSLTYLTSLRNDERISHQLDVKFQEMYLKKVCALLRCNLHEGAVAS
KAPAEIGESVAVEGDKAQDPMDVEEGELPDSQAVSVGEHVDEILGAAVADGKVTPKVQSL
IKILLRYQHTDDFRAIIFVERVVAAQVLPKVFAELPSLKFVKCASLIGHNNNQDMRTRQM
QETISQFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYI
LMLERGNQQHKVFLRNAKNSEETLRKEAIERTDLGERRENAILASMDLGDREIYQVPATG
AVVSMNSAVGLIHFYCSQLPSDRYSILRPEFIMNKIESQGGAVRYSCKLQLPCNAPLENV
DGPECNSLRGAQQSVCLEACKRLHEMGAFTDMLLPDKGSGEEAAKVEGSEEGEPLPGTSR
HREYYPEGIADILKGDWILADKDPDAKPGSNVLVYVYMVKCENVGFSKDNLLTETSDFVI
LVGQKLQDEVLDMTMDLFVARTMITRASLEFCGNLDLSLHELTDLKSFHVRLMSIVLDVN
VDPATTPWDPAKAYLFAPVAHKVDSDPLEMVDWGLVRKTIETDSWSNPLQRARPDVYLGT
DERALGGDRREYGFGKLRCGLAFGQRAHPTYGIRGAVAQFDVVKATGLLSSQDIVEKTVV
QEVPPEGKLLIADGFVEVEGLVGRIVTAVHSGKRFYVDSVRFDMTADSSFPQKDGYLGPL
EYTSYADYYKQKYGVELVCKKQPLLRGRGVSHCKNLLSPRFETSTGGTLDSLDALDKTYY
VMLPPELCLIHPLPGSLVRGAQRLPSVMRRVESMLLAIQLKHQIDYPIAASKVLEALTAA
SCQETFSYERAELLGDAYLKWVVSRRLFLKYPCKHEGQLTRMRQQIVSNSVLYQYALDKG
LQSYIQADRFAPSRWAAPGVPPVFDEDIKDGDDSDKSLKAEASREVVEIVSEEGEIVVKE
LSTESASMEDGEIEGDSSAYRVLSSKTLADVVEAFIGIYYVEGGQDAATHLMNWIGIPVE
FDDAEAELAIGGCEVPETVMLSIDFDSLEASIGHKFRKRSLLVEAITHASRPSSGVPCYQ
RLEFVGDAVLDYLITRFLFFKYTDLPPGRLTDLRAAAVNNENFARVAVKHSFHLHLRHGS
SALETQIRNFVNDIQTELDKPGVNSFGLGDFKAPKVLGDILESIAGALFLDACLETDHVW
KVFEPLLQPMVTPETLPMHPVRELQERCQQQAEALEYKASRAGNVATVEVYVDGVQIGSA
QNAQKKMAQKLAARNALVILKEKEVTKEKSEAENSEANNGKSSKNGHTNFTRQTLNDLCL
KRQWPMPQYRCVLEGGPAHAKKFTFSVRVLTTTDGWTEECVGDPMPSVKKAKDSAALLLL
ALLKRS
NT seq
5601 nt
NT seq
+upstream
nt +downstream
nt
atggagcgaacgggggagcggaggggcgagacgcgagggcgaggcgcgtatagcgaggag
gtgtatgaacgagggaagagaagccgggaggatgatggccgggacgattggcgcgggggc
gggggcgtgaagcggtcggtgcgggttggcgagcgaggcggatttcggagtggtggagat
tttcggtctatgtcgaggtctaggtcgaggtccagagagatagagcgagagcgtgtaggg
aaagaggcggaggatggtgagcggaagggtgagcgcagacggaggtcttctttcgaatat
gactctgatgattggcgcacggagaagaggaggcggtatcatcgtgaattggacagtagt
cggcattatcacgggtccagagggggccgcgataggcagtggattggtagagtggattac
gaccggcgggagcgatttgttgcaccgtctcgcgatcgcgacagggaaggtgagcggtcg
catgttggaaaggagagaattaaggatggggtggaggactcgaaagtggagttggaaaat
ggacagaatggggacaatgaagaagaggagaaggcgcgtacttatcagcttgaagtacta
gcacaagcgaagatgaagaataccatcgcattccttgaaacaggcgctgggaagaccctg
attgcggtgctattgatgaagcataagtaccaggtgttgcgggagcagggaaggcgtatg
ctcgccgtctttctcgtccccaaagtaccacttgtctaccagcaagcagaggtgattcgc
aacggcacaaatttcgttgttggacattattgcggggaaatgggtcaagatttctgggat
gctcggaggtggcagcgagaattcgacaccagagatatttttgtaatgaccgcacagatt
ctcttgaacatccttaggcacagcattgtaagaatggaagctattcacctactcatttta
gacgagtgtcaccatgccgtgaagaaacatccttactcgttggtgatgtctgaattctat
catgttacacctaaagacaaacgaccgtgtgtttttgggatgacagcgtcgcccgtgaat
cttaaaggagtgtcgaatcaggaggattgtgcaataaagattcgaaacttagaaagtaaa
ctggattcgatagtgtgcacaattaaggatcggaaggagcttgagaagcacgtgcccatg
ccatcagagataatggtcctatatgataagccggccttgcttttctcattgcgggaggag
ataaaactgatggagtctactgtagaggaggctgctaatgcaagtgtcagacgcagcaaa
tggaaattcatgggcgctcgggacgcgggtgctaaagaggaattgcgtctcgtatatggt
gttgcagagaggacagaaagcgacggcgcagctagtctttctcaaaagctcagagctatt
atatatgcgcttgatgagttgggtcaatggtgtgcatacaaggtttctctcacatatctt
acgagtctacgtaatgatgaaagaattagtcatcaattagatgtaaaatttcaagagatg
tacttgaagaaggtttgcgcccttctgcgctgcaatctacatgaaggcgctgtagctagt
aaagctcctgctgaaattggagagtctgtggctgttgagggcgataaagcacaagatcca
atggatgtggaagaaggagagcttcctgactctcaagcggtatcagttggtgaacatgtg
gatgagatccttggagctgctgtagcagatggaaaggtgactccgaaggtgcagtcccta
attaagatcttgctacggtatcagcacaccgatgacttccgagctatcatatttgtagag
cgggtagttgccgcgcaggtgttgcccaaggtcttcgcagaattgccttcattgaagttt
gtgaaatgtgccagtctgatagggcataacaacaatcaagatatgcggacacggcagatg
caggagacaatttcccagtttcgagatggacgggtgacgttgctggtggctacaagcgtg
gctgaggagggattagatattcgccaatgtaatgtggtcattcgttttgatctcgccaaa
actgtgctagcttacattcagtctcgtggtcgtgctcggaagccgggttcagattacatt
ctcatgcttgagagaggaaatcagcaacataaggtgtttttgcggaatgcaaaaaacagt
gaggagactttacggaaggaggccattgaaagaactgatctgggtgaaaggagagaaaat
gcaattctggcctccatggatttaggggatagggagatttaccaggtgccagccactggg
gcagtagtgagcatgaactcagctgtaggtcttattcacttctactgctctcagcttcct
agtgacaggtactctattttgcgccccgagtttatcatgaacaagattgagagtcaaggg
ggtgctgtaagatattcatgcaaacttcagttgccttgcaatgctccacttgagaatgtt
gatgggccagaatgcaattcgttacgaggagcgcagcagtctgtgtgcttggaggcatgt
aaaagacttcatgagatgggggcctttaccgacatgctactacctgataaaggtagtggg
gaagaggctgcaaaggtggagggtagtgaagaaggagagcctcttcctggcacatcccgc
catcgagaatactatcctgagggcattgccgatatactgaagggcgattggattttggct
gataaagatcccgatgctaaaccaggcagcaatgtattagtatatgtatacatggtcaaa
tgtgaaaatgttggcttttcgaaagacaatctattgactgagacatctgatttcgtcata
ctcgttggtcaaaagctccaagatgaggtgttagacatgacaatggatctttttgttgca
cgaacaatgattactagagcgtctctcgagttttgtggtaacttggacttgagtctacac
gagttgactgacctcaagagttttcatgtgaggcttatgagcattgttttagacgtcaat
gtcgatccagcaactactccttgggatcctgctaaagcgtacctttttgcgccagttgcg
cataaagttgattccgatcctttagagatggtggattggggcttggtgagaaagacgata
gaaacagattcgtggagcaatccattgcagcgcgcacggcctgatgtatatttaggaact
gatgaacgtgctctcggcggagatcgtagggagtacggatttggaaagctgcgatgcggc
ttggccttcggtcaaagagcacatccaacttatggaattcgtggtgcggtagcccaattt
gatgtggtgaaagccacaggtcttctctcttctcaagatattgtggagaagacagttgtc
caggaagtacccccagagggcaagctgctgatagcggatggttttgttgaagtcgaagga
ttggttggacggattgttactgcggtgcactcaggaaagaggttttatgtggattcagtg
cgcttcgacatgacagctgatagctcttttcctcaaaaggatgggtaccttggtccgttg
gaatacacatcttacgctgattattacaaacaaaagtatggggtcgagttggtttgcaag
aaacagcctctgttgaggggtcgtggggtttctcattgcaaaaatttattgtcgccacgt
tttgagacctctactggtggaacactcgactctctggatgccttggataagacgtattat
gtgatgctgccacctgagctttgccttatacatcctcttccgggatccttggtgagaggc
gcacaaagattgccatcggtcatgagacgtgtagagagcatgttgcttgccatacaacta
aagcaccaaatcgattaccctattgctgcttcgaaggttttggaggcattgacagctgcg
tcttgtcaagagaccttcagctatgagcgtgcagaacttcttggagacgcgtacctgaaa
tgggttgttagtcgtcgattgttcctgaagtatccttgtaaacatgaggggcagcttaca
cgtatgagacagcagattgtcagtaattctgtcctgtatcaatatgctcttgataaagga
cttcagagttacattcaagccgaccgcttcgcaccatcccggtgggccgcaccgggggtg
cctcctgtgtttgatgaggatataaaagatggcgatgattcagacaaatctttgaaggct
gaagcttcaagagaagttgtggagatcgtcagtgaggaaggtgaaattgtcgtcaaggag
ctgagtaccgaaagtgcaagcatggaagatggtgaaattgaaggtgattccagcgcctat
cgagtgttgtcaagtaaaacactggcagatgtagtcgaagcattcataggaatatactat
gtggaggggggccaggacgctgcaacccacttgatgaattggataggcatccccgttgag
tttgatgacgcagaagcagagttggccattggaggatgtgaagttcctgaaaccgtcatg
ttgagtatagacttcgactcattagaggcaagtattggccataaatttcgtaagcgaagc
ctgttggtagaagccataacacatgcgtctagaccatcgtcgggagttccttgctaccaa
agactggagtttgtgggggacgccgtgttggactatctaattacccgtttcctattcttc
aaatacactgatttaccgccaggtcgattgaccgatttgcgagctgctgcagtgaataat
gagaatttcgcacgtgttgccgtgaagcactcgtttcaccttcatttgcggcatggttct
agtgccttagagacgcagatacgcaactttgtgaatgatatacagaccgaattagataag
cctggagttaactcttttggactcggagattttaaggcccctaaagtgctgggcgacatt
ctcgagtccattgcaggagctctattcctggatgcttgtctagaaacagaccatgtgtgg
aaggtttttgagcccttattacagccgatggtgacccctgaaacattgccgatgcatcca
gtacgagagttgcaggagcgttgtcaacaacaagctgaagctttggagtataaagcgtca
cgtgcaggtaacgttgcaactgtggaggtttatgtggacggtgtacagattggatctgcg
caaaatgctcagaagaaaatggcgcagaaattagctgctcgtaatgcgttggtcatattg
aaggaaaaggaggtaacgaaagaaaaatccgaagcagagaatagtgaggccaataatgga
aaatccagtaagaatggccataccaatttcactcgccaaacgcttaatgacctttgctta
aagagacagtggcctatgccgcagtacaggtgcgtcttggaaggagggccagcgcacgct
aagaaatttacgttttctgtccgtgtgcttaccaccacggatggatggactgaagaatgt
gttggagatcccatgccgagcgtgaagaaagccaaagactctgcagcacttttacttctg
gctttactgaagcgttcttag
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