Physcomitrium patens (spreading earthmoss): 112278978
Help
Entry
112278978 CDS
T01041
Name
(RefSeq) probable pectate lyase 8 isoform X2
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp00040
Pentose and glucuronate interconversions
ppp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112278978
Enzymes [BR:
ppp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112278978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
112278978
NCBI-ProteinID:
XP_024368728
UniProt:
A0A7I4BVC3
LinkDB
All DBs
Position
1:3111016..3114234
Genome browser
AA seq
434 aa
AA seq
DB search
MQVRFLELARSGGLVQPLPHVERWLLRMLVSRRSEPSDNQNTWVANTPSTYSHDKFSSMR
STCRMKKINHNNSRRMMGECMTGNLIDDCWRCDNQWRQHRQALAKCALGAGSNVVGGANG
RIYVVTDDSDADAVNPIPGTLRYGAIQQEPLWITFSQDMSIHLRNELILTSFKTIDGRGF
NVHIAGGAGLTLQSISNVIIHGVHIHDTVPTGPATVRSSMTHSGGRGRTDGDAINIYSSH
DIWIDHCYFANGADGLVDVTMGSTGVTISNNYFTDHDKVILLGAHPRDMFDMHMRVTVAY
NHFGPRLIERLPRIRHGCVHVLNNMYEGWGMYAIGGSEGPTIVSQGNVFTAPNGGNKEVS
KRLQDGDDGSLSNWNWQSSGDVFLNGAFFTASGAPLGSQVYSTALNDVTALPATMVATIT
ADAGPLACASEGIC
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtgcgcttccttgagttggctcggagcggtggtttggtccaaccgttacctcac
gtggagcgatggctattgagaatgcttgtgtctcgaaggtctgagccatctgataatcag
aatacgtgggttgcaaacacaccttcgacctattcccatgataaattttcatcaatgcga
tcaacatgcagaatgaagaaaattaatcacaacaattctaggaggatgatgggtgaatgc
atgacaggaaacctaatagacgactgttggcggtgcgacaaccagtggcgtcaacaccgc
caagctcttgccaaatgtgcgttaggagctggaagcaacgttgtcggaggtgcgaatggg
aggatttatgtggtgactgatgacagcgatgccgatgccgtaaacccaatccccggcacc
ttgcgctacggagctattcagcaggaacccttgtggattaccttctcccaagacatgtcc
atccacctccgcaatgagctcattctaaccagcttcaaaactatagatggaagaggattc
aacgtccacatcgctggcggcgcaggcctcaccttacaatccatctccaacgtcataatt
cacggcgtgcacatccacgacactgttcccactggtcctgccacagtccgaagctccatg
acacactccggaggcaggggaagaactgatggcgacgccataaacatctactcttcacac
gacatttggatagatcattgctacttcgcgaatggcgcggatggcttggttgatgtcacc
atgggctccactggcgtcacgatctctaacaactacttcactgatcacgataaggtgatc
ttgttgggcgcacacccgagagatatgttcgacatgcacatgcgcgtcactgttgcatat
aatcacttcggccctaggcttatcgagcggctaccgaggattcgtcacggttgtgtccac
gttttgaacaatatgtacgagggctgggggatgtacgcgattggtgggagcgaagggcca
accattgtaagtcaagggaatgtcttcacggcgccgaatgggggcaacaaggaggtcagc
aagagactacaggatggggatgacgggagccttagcaactggaactggcaatcgtcaggt
gacgtttttctgaatggagctttctttacggcttccggtgctccgctgggttctcaagtg
tactcaacagctttgaacgacgtcacagccttgcctgccaccatggttgcaaccattaca
gcggatgcaggacctctagcttgcgcgtccgaaggcatctgttga
DBGET
integrated database retrieval system
