Physcomitrium patens (spreading earthmoss): 112279004
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Entry
112279004 CDS
T01041
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp00040
Pentose and glucuronate interconversions
ppp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112279004
Enzymes [BR:
ppp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112279004
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
112279004
NCBI-ProteinID:
XP_073389035
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Position
1:7416139..7419694
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AA seq
543 aa
AA seq
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MASGRMARLLTVLMVLALQWTSPHARSMPGDFDTLEYVPTDQEYPGFPQDTGSSAQFDTP
VFTAQTGDAFGSNPEIDNSDATNWDAETFNSQDPVASHSEVAQYNSYAATEGELPYDVLI
DSPESVREPPSTSFAGEVVYHSKAAYMNDEVFYDTSAADIIYKANDDGLSLAAADLNATD
ADDMLSSFAKAMGGCGTGNPIDDCWRCDPNWRSHRQALANCATGFGRNAIGGKNGPIYTV
TTNGDDAQNPQPGTLRYGVTRNGPLWIVFATSMTIELKGELWISAYKTLDGRGAEVHIVG
GSQISIQTTNNVILHGLHIHDIRPSGPTTIRVSPSKVVRRPRSEGDGLHIWGSRDVWIDH
CYLARATDGLIDVTRGSTMVTISNCFLEKHDKTMLLGADPAHTEDRNMRVTVAFNRFGPG
LVQRLPRCRFGVFHVLNNDYSAGWGIYAIGGSEDPTILSQGNRFNPAGTKEVTKRINDGG
PNYGGWQSWNWASSGDVFLGGSYFTGSGAKATSASVYAKAYSTSSRPADMVPAITKSAGP
LML
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgggcgaatggcgcgtttgttgacggtgctgatggtgcttgcattgcagtgg
acgtctccccacgcgaggtcaatgccgggagattttgacactctggagtatgttcccact
gaccaggagtacccgggattcccccaagacaccgggtccagcgctcaattcgacacgccc
gtcttcaccgcccagacaggcgatgcgtttggttccaaccccgagattgacaattcggat
gctaccaactgggacgccgaaaccttcaacagccaggacccggtggcgtcacattcagaa
gtggcacaatacaactcttacgcagcgaccgagggcgagctaccatacgacgttcttatc
gattctccagagagcgtacgagaacctccttccaccagcttcgcaggcgaagtcgtgtac
cactccaaagctgcttacatgaacgatgaggtcttctacgacacgtctgctgcggacatc
atttacaaggccaacgatgatggattgagccttgctgctgctgacctgaatgccacggac
gcggatgacatgctctcttctttcgcgaaggccatgggcgggtgcggtactggcaacccg
atcgacgattgctggcggtgcgacccgaactggcgcagccatcgtcaggcgctggccaac
tgcgccaccggattcgggagaaatgccatcggcggcaagaatggacccatctacacagtc
accaccaatggagatgacgcgcagaaccctcagccgggaacactgcgctacggagtgact
cgaaacggaccgctttggattgttttcgcgacgagcatgaccatcgaactgaagggagag
ctctggatctccgcgtacaagaccctggacggtcgtggcgccgaagttcacatcgtggga
ggctcgcagatcagcatccaaaccaccaacaacgtcatcctgcacgggctgcacattcac
gacattcgaccgtcgggcccaaccaccatacgagtgtcgccatccaaagtggtccgccgc
ccaaggtccgagggcgatggccttcacatctgggggtcccgggatgtgtggatcgaccac
tgctacttggccagggcgaccgatgggctcattgatgtcacccgcggatccactatggtc
acaatttccaactgcttccttgaaaaacacgacaagacgatgctgcttggagcggacccc
gcccacaccgaggacaggaacatgcgggtcaccgtggctttcaacagattcggacccggc
ctcgtccaacggttaccgaggtgccggtttggcgtgtttcatgttttgaacaatgactac
tcggccggatgggggatatatgcgattgggggcagcgaagatcccaccattctcagccaa
ggcaatcgattcaatcctgcgggaacgaaagaggtaaccaaacgcatcaacgacggcggc
cccaattacggtggatggcagagttggaactgggcctccagcggcgacgttttcctggga
gggtcgtatttcactggctccggagccaaggccacctccgccagcgtctacgccaaggct
tacagcacctcgtcacgccccgctgacatggtacccgccatcaccaaaagcgcgggtccc
ctcatgttgtag
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