Physcomitrium patens (spreading earthmoss): 112279077
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Entry
112279077 CDS
T01041
Name
(RefSeq) autophagy-related protein 16
KO
K17890
autophagy-related protein 16-1
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
112279077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppp04131
]
112279077
03029 Mitochondrial biogenesis [BR:
ppp03029
]
112279077
Membrane trafficking [BR:
ppp04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
112279077
Others
Specific organelles associated proteins
Auto phagosome
112279077
Mitochondrial biogenesis [BR:
ppp03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
112279077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
ATG16
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_EIPR1
TSC22
Beta-prop_Nup120_160
AAA_13
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Crescentin
Beta-prop_NWD2_C
WDR54
zf-C4H2
Beta-prop_WDR11_2nd
TPR_MLP1_2
CCDC93_CC
Fez1
DUF4982
RF-1
DUF1664
Exonuc_VII_L
DUF2730
DUF4407
Filament
CC4_CEP85
YkyA
Knl1_RWD_C
Motif
Other DBs
NCBI-GeneID:
112279077
NCBI-ProteinID:
XP_024368947
UniProt:
A9RG98
LinkDB
All DBs
Position
2:3964135..3966408
Genome browser
AA seq
510 aa
AA seq
DB search
MEMEDRMGYAIVQACRAIKRRHKLEEGAFAPAIAAISHVVNSPATLELGEKLKDLQIELN
QSYQKHSQVSDRLVQEVTESQSLRTQLGDKETAINELQEELTAAKEKILQIEINVKETQG
ALDATTSEVDELRSHVKELEGQIIDLKKENDMLIERWMDQKMRDAERLNEANAMYEDMME
KVKAGQLMELARTQVDGIVRHSEAGAENYVKSGLPSAVKHVIRAHDVMCSAIHFEQGGKN
VYSGGHDKLVKSWNVVNGSCMSTLRGCLGSVLDLSMSYDKNLVIAACSDHKLHLWESQTG
RMRHTLTGHTEKVVSVDISKTSNRRAVSAAYDRTLKAWDMQTGYVTNTLICYSNCNAVAL
TMNGEVLCSGHMDGNLRLWDIRSGKQSSEVVAHNQGITSVSVSRNGHTMLTSGRDNVHNM
IDVRTLEVQASFRAPGLLVATNWSRSCLSPDERYVAAGGADGSVVVWNRFAKDGTVTLKG
HSSPVLACTWSDEGRPLVTADKSGCVIVWE
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggagatggaggatcggatggggtatgctatcgtccaggcctgtagagcaattaagcga
cgccacaagttggaggagggggcatttgcgccagctattgctgctatatcccatgtggtc
aattcgccggccactctggaattgggagagaaattgaaggatttgcagatagagttgaat
caaagttatcaaaagcattcacaggtatcggataggctagtacaggaagttacggagagc
caatcgttacgtacgcagcttggggacaaggaaactgctatcaatgaactgcaagaggag
ctcactgctgcaaaggagaagattttgcaaattgaaattaacgtaaaggagacacaagga
gccctagatgccaccacctctgaggttgacgagctccgatcacatgtcaaggaactcgaa
ggacaaatcatcgatttgaagaaggagaatgacatgttgattgagcgttggatggatcaa
aaaatgcgggacgcggaacggctcaacgaggccaacgctatgtatgaggatatgatggag
aaggttaaagctgggcagctaatggagctcgctcgcacccaagtggatggcatagttaga
catagtgaagctggcgcagagaactacgtcaaatctgggctcccttcggcggtgaagcat
gtcatcagggcacacgatgtcatgtgttcagcaattcatttcgaacaaggaggcaaaaat
gtctacagtggaggacatgacaagcttgtcaaaagttggaatgtggtaaatggatcttgt
atgtccactcttaggggttgcttgggttctgtattggacttatccatgtcctacgacaaa
aatctggttatagcagcatgtagtgaccataaattgcatctgtgggagagtcagacaggt
cggatgcggcataccttgacagggcatactgagaaggttgtttctgttgacattagcaaa
acaagcaatcgacgcgccgtgagtgctgcctacgatcggacattgaaggcatgggacatg
cagacaggatatgtcaccaacactttgatttgctactctaattgcaacgccgtggccctg
accatgaacggggaggttctttgctcgggtcatatggatgggaacctacgcttgtgggat
atccgctctgggaagcagtcaagcgaggttgttgcccacaaccagggaataacatcagtc
tctgtgtccagaaatggccacacgatgctgaccagcggaagggataatgtgcacaatatg
atcgatgttcgcaccttagaagttcaggcttcgtttcgagctccgggccttttggtagca
acaaattggagcagatcatgtctgagtccagacgagagatatgttgctgcaggtggagcg
gatggatctgtagtagtatggaatcgtttcgcaaaagatggtaccgtgactctgaaagga
cattccagccctgtattagcttgtacgtggagtgatgaaggtagaccactggttactgca
gacaagagcgggtgtgtcatcgtgtgggagtaa
DBGET
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