Physcomitrium patens (spreading earthmoss): 112279095
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Entry
112279095 CDS
T01041
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03020
RNA polymerase
ppp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112279095
09124 Replication and repair
03420 Nucleotide excision repair
112279095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppp03021
]
112279095
03400 DNA repair and recombination proteins [BR:
ppp03400
]
112279095
Enzymes [BR:
ppp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112279095
Transcription machinery [BR:
ppp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
112279095
DNA repair and recombination proteins [BR:
ppp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
112279095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
112279095
NCBI-ProteinID:
XP_024368974
UniProt:
A9SJE5
LinkDB
All DBs
Position
2:7413336..7419095
Genome browser
AA seq
1185 aa
AA seq
DB search
MYGGDEEYDDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSDIE
IRPESQHNPGRQAEIGDVTYKINFGQIYLSKPMMTEADGETATLWPKAARLRNLTYSAPL
YVDVTKFVTRKTEDGEEETEQEDLSKVYIGKVPIMLRSRYCTLFENSDKDLTELGECPYD
QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYCYVAEVRSMAENQNRPPSGMFVRM
LSRAGAKGGSSGQYIRATLPYIRTEIPIIVVFRALGFVADKDILEHICYDFSDTAMMELL
RPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKK
AYFFGYIIHRLLLCAIGGAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKC
VDNGKEINLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLR
RLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMAYITVGSAANPILE
FLEEWSTENFEEISPAVIPNSTKIFVNGLWVGIHRNPELLVRTLRQLRRQVDVNTEVGVV
RDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKQDVRALQMKESSENSWYDLVSKGFIEY
VDTEEEETTMISMTIADLVNARNNPEEAYSDTYTHCEIHPSMILGVCGSIIPFPDHNQSP
RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV
AIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDEEKKQGTLIKEEFERPNRENTTGM
RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLPQDDNASQAQRYTKRDQSTCLRHSESG
MIDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGIT
PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR
GFEVMYNGHTGRRLTAHIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG
LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGIIAIANLKKNTYECRGCKNN
TDIVQVHIPYACKLLFQELMSMAIAPRMFTKELKMRSEHAKKAAA
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgtatggcggtgacgaggaatacgatgatgaagaggaggagataacgcaggaggatgcg
tgggcggtcatcagtgcgtactttgaagagaagggtttggtgcggcagcagctggactcg
ttcgatgagttcattcagaatacaatgcaggaaatcgtggacgagtcttcggatatcgag
attcgtcccgagtcacagcacaaccccggtcgtcaggctgagattggcgatgttacatac
aagatcaattttggtcaaatctatctcagtaagcctatgatgactgaagccgatggagaa
acggccacactttggccgaaggctgctaggcttcgaaacttgacgtattcagctccactc
tacgtggatgtcaccaagtttgtcacgaggaagactgaagatggggaggaggagacggag
caagaagatctatctaaagtttatattggcaaggtgcccatcatgcttcgttcacgctat
tgcacactattcgaaaactccgacaaggaccttactgagctcggagagtgtccctatgat
caaggaggctatttcatcattaacggcagtgaaaaggtgctcatcgcacaggaaaaaatg
agcacgaaccatgtgtatgtcttcaaaaagaggcaaccgaataaatattgttacgtggct
gaagtgcgctctatggctgagaaccagaacagaccccccagtggtatgtttgttcgaatg
ctctcccgagctggtgctaagggaggttcttcgggacaatatattcgcgcgacgctaccc
tacatccgcacggaaattccaatcatcgtggtttttagggctctaggtttcgtggctgat
aaagatatcttggagcatatttgttacgacttcagtgatactgccatgatggagttgctg
aggccttctctggaggaagctttcgtgattcagaatcaacaagtggctcttgattacatt
ggaaagcgtggttctactgttggagttactagggaaaaacgtattaagtatgcaaaggag
attctgcagaaggaaatgcttccccacgtgggagtaggagagttttgtgaaacaaagaag
gcttacttttttggttatattatccaccggctgttgctctgtgcaataggtggagcagaa
gatgatcgtgatcattatggcaacaagcggttggatcttgcagggccccttcttggtggg
ctctttcggatgctttttcgaaagcttacaaaggatgtccgaggatacttgcaaaagtgc
gtggataatgggaaagaaatcaaccttgcctatgcagtcaaggctaagaccattacaagt
ggtttgaagtactcgctggctacaggaaactgggggcaggcaaacacagctggtgtgaga
gcaggagtatcgcaggtgctgaatcgcttgacctacgcttcgactctctcgcatttacgt
agactcaactcccccatcggtcgtgaaggcaagcttgcgaagcccaggcagcttcacaat
tcccactggggtatgatgtgcccagctgagacccccgagggtcaggcatgtggacttgtc
aagaatttggcgctgatggcatatattactgtcggctcagctgccaatccaattctggag
tttttggaggagtggagtactgagaacttcgaagaaatttctcctgctgtgatccccaac
tccacaaagattttcgtgaatggtctgtgggtgggaattcatcgcaatcctgagttgctt
gtacgaacactgcgtcaacttcggcgacaggtcgatgttaacactgaagtgggggttgtg
agagatatccggttaaaagagctacgactgtacacggattacggacgttgtagtcgtcct
cttttcattgttgagaagcaacgtttgcttattaagaagcaagacgttcgagcgttacaa
atgaaggaatcctccgagaacagttggtacgatcttgtttctaaggggttcattgagtac
gtggatactgaagaggaggagacgactatgatctccatgaccattgctgatcttgtcaat
gccaggaacaatccagaggaggcctattctgacacatacacgcattgtgagattcatccc
tccatgattctgggggtctgtggctctattatccccttccctgatcacaaccagtcgcca
cgtaatacctatcagtctgctatgggcaagcaagctatgggaatttatgtcacaaactat
cagcttcgaatggacacgctagcttacgtcttatactatccccaaaagccgttggtgacc
acgagagccatggagcacttacatttccgacaacttcctgctggaatcaatgcaattgta
gctattgcttgctactcaggttataaccaggaggattctgtcatcatgaaccaatcttct
attgatcgagggtttttccgctctatcttttacagatcctacagggatgaggagaagaaa
caaggcactctgattaaggaagaatttgagagacccaatagagaaaataccactggtatg
cggcatggttcgtatgacaagcttgatgacgatggacttgccccacctggtactcgagta
tcaggcgaggatgttatcattggcaagactacaccgttgccacaagatgacaacgctagc
caagcccagcgatacacaaagcgggatcagagcacttgcttgcggcatagtgaaagtggt
atgatcgatcaagttttactgacaaccaacgccgatggtctgcgttttgtaaagatcagg
gttcggtctatccggattcctcaaattggagacaagtttagtagtagacatggacagaag
ggaacagttggaatgacttacacccaggaagatatgccttggactcaagagggaattaca
ccagatatcattgtcaacccccatgctattccgtctcgaatgactattggtcagctcatt
gaatgtattatgggcaaagtggctgctcacatgggaaaggaaggagatgccacaccattc
actgatgtcactgtggataacattagtaaagccctgcacaagtgtggttaccaaatgagg
ggttttgaagtgatgtacaatgggcacacaggccgaaggcttactgcacacatctttttg
ggtcctacttattaccagcgactcaagcatatggttgatgataagattcattcaagggga
cgaggtcctgtgcaaatcttgacacgacagcctgcagaaggtcgatccagggatggaggt
ttgcggtttggagagatggaaagagattgtatgatcgctcacggtgcagctcatttcctg
aaggagcgcttatttgatcaaagtgatgcttaccgagttcacgtttgtgagcattgtggt
atcattgccatcgccaacttaaagaagaatacttacgaatgccgaggctgcaaaaacaac
actgatattgtacaggtgcatattccgtatgcttgtaagcttctctttcaggaattgatg
tcaatggcaattgctcctcgaatgtttaccaaggagttgaagatgagaagcgaacatgcg
aagaaagctgctgcctaa
DBGET
integrated database retrieval system
