KEGG   Physcomitrium patens (spreading earthmoss): 112279641
Entry
112279641         CDS       T01041                                 
Name
(RefSeq) sm-like protein LSM4 isoform X1
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
ppp  Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018  RNA degradation
ppp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ppp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112279641
  09123 Folding, sorting and degradation
   03018 RNA degradation
    112279641
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppp03019]
    112279641
   03041 Spliceosome [BR:ppp03041]
    112279641
Messenger RNA biogenesis [BR:ppp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     112279641
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     112279641
Spliceosome [BR:ppp03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    112279641
SSDB
Motif
Pfam: LSM GDE_C SM-ATX
Other DBs
NCBI-GeneID: 112279641
NCBI-ProteinID: XP_024370046
UniProt: A0A2K1LB13
LinkDB
Position
1:complement(24766850..24769269)
AA seq 87 aa
MLFQQPCFLFHFSKAAQGYTMLVELKNGETYNGHLVNCDTWMNIHLREKICTSEDGNCFW
RMPECHIRGNTIKYLRVPDEVIDKVQE
NT seq 264 nt   +upstreamnt  +downstreamnt
atgttgttccagcaaccatgcttcctctttcacttttcgaaggcagctcaagggtatact
atgcttgttgagctgaagaatggagagacttataatggtcatttagtgaactgtgataca
tggatgaatattcaccttcgtgaaaaaatttgcacttcagaggatggcaactgcttttgg
agaatgcctgagtgccatattcgaggaaataccatcaaatatttgcgggttcctgatgag
gtcatcgacaaggttcaggaatag

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