Physcomitrium patens (spreading earthmoss): 112279947
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Entry
112279947 CDS
T01041
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp00040
Pentose and glucuronate interconversions
ppp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112279947
Enzymes [BR:
ppp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112279947
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
112279947
NCBI-ProteinID:
XP_024370528
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Position
3:complement(23623050..23626019)
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AA seq
404 aa
AA seq
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MAILRRDAAFFWLIAFALPQCWAARPLEVSAKSAAPILSDSAHVQTDNFTRRVLAGCGSG
NPIDDCWRCDPLWRENRQGLANCAIGFGRSAVGGRNGEIYVVTDESDDDVVNPAPGTLRW
GVVQSEPLWIVFSRNMNIKLKEELLMNSYKTLDGRGANVHIAGGACITAQYVSNIIIHGI
HIHDCKSTGPADIRSSPDHFGYRGRADGDAVSIFGSHDIWVDHNYLSNGADGLVDVIEGS
TGITISNNYFSNHDKVMLLGAHPDDSFDTAMLVTVAFNHFGEGLVERIPRCRYGYFHVVN
NYYTSWAMYAIGGSENPTINSEGNHFVAGNAKEITKRINDDGSKIDGWENWNWRSAGDLF
ENGAFFIDSGSRGSGSFYAKATSFSARPAVLVASMTNDAGPLMV
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggcgatattacgaagagatgctgcattcttctggctgattgcttttgccttgcctcag
tgctgggctgcgaggccactcgaggtttctgccaagagcgcagctccaattctcagtgac
agcgcccacgtccaaaccgacaatttcacacgccgagtgctcgctggctgcggatccggc
aaccccattgacgactgctggagatgcgacccactttggagggaaaaccgacaagggctc
gcaaattgcgcaattgggttcggcagaagtgcagtcggagggaggaatggtgaaatctac
gttgtcacagacgagagtgacgatgatgtggtcaatcctgcaccgggcacactccgctgg
ggcgtggttcaaagtgagcccctatggattgtgttctcccgcaacatgaacatcaagctg
aaggaggagctgctaatgaacagctacaagaccctggatggacgaggtgccaatgtgcac
attgctggaggagcttgcatcactgcccagtatgtgagcaacatcataattcacggcatt
cacatccacgactgcaagtccaccggccctgcggacatccgaagttctcccgaccacttc
ggatacaggggcagggcggacggagacgcagtgtcgatctttgggtcccacgacatctgg
gtggatcacaattacctctctaatggagccgatggcctggtggacgtgatcgaaggctcc
acgggcatcacaatctccaacaactacttcagcaatcacgacaaggtgatgctactggga
gctcacccagatgacagcttcgacaccgcgatgctggtcacggttgcgttcaatcacttt
ggagagggcctagttgagcgcattccgaggtgccgatacgggtattttcatgtggtcaac
aactattacaccagctgggcgatgtatgccattggaggaagtgaaaaccccaccatcaac
agcgagggcaaccatttcgtagcgggaaacgccaaggagatcaccaagcgcatcaacgat
gatggcagcaagattgacggctgggagaactggaactggcgaagcgcaggggacttgttc
gaaaacggcgctttcttcattgactcggggtcaagaggctcaggcagcttctatgccaaa
gccaccagcttctctgctcgaccggctgtcctggttgccagcatgaccaatgatgcaggt
ccgctcatggtatag
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