Physcomitrium patens (spreading earthmoss): 112279985
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Entry
112279985 CDS
T01041
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112279985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppp03021
]
112279985
Transcription machinery [BR:
ppp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
112279985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
Zn_Ribbon_1
DZR_2
zf-C2HC5
DZR
Motif
Other DBs
NCBI-GeneID:
112279985
NCBI-ProteinID:
XP_024370613
LinkDB
All DBs
Position
3:1342105..1346567
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AA seq
541 aa
AA seq
DB search
MSPLPDLVLKDSCTGCRGTADLYGSNCGHLTLCLKCGKSMAETQAPCSECGTPVTRLIRE
YNVRANTINKQHFIGRFLQGQPMFSKKKSGGPRWSLQREGLTGRQLSEAQREKFKQKLWI
LEDDIGLQQFQGQLEGGQQATYFTLSMHGSEFTASPAGAWYNFNKVAHYKQLTLEEAEEQ
MKNRRKTADGYQRWMMKASNPDIDKLPGSGGAGGGRGRKVGADDDDMGSDKGEDEDEEFG
GKKRLNLNKTAKGGDDDGEDAANDIDMDEEEPERGDDWEHEETFTDDDEAVGNDPEEREE
QVPEGPAPPEIKQEEEDEEDEKEGQQNEEGQGGLSKSGRELKKLLGKQGFDDSDGGDNDK
QALDESDGDDDVDLDNDEVGMSPVLAPALKKKDAPKETPAEPTPAKAGNVKSAAAGSSKG
KRKAPAAGDDTKLISNKKAKAGDADKGSKTAAGKKESNKNAPAKGTPAPASAAAKPAAAA
GNLEDEVKAFLRQTGPVKSNELVTRFKNRLKSPEDKSAFAAMLKRISRIDKKDGVSYIVL
R
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctcttcccgacctggtgttgaaagatagctgcacgggatgtcgtggaacagca
gacctctacggtagcaattgtggtcacttaactctttgcttgaagtgtggaaagtctatg
gcagagactcaggctccttgttctgagtgcggcacccctgtcactcgtctgattagggag
tataatgtgcgtgcaaatactatcaacaagcagcactttatcggtcgcttcttacagggg
cagccgatgttctcgaagaagaaatctgggggtccaaggtggagtttgcagcgtgaaggt
cttacggggcgccagttgtccgaagcacagagggaaaaattcaaacaaaagctgtggata
ctagaggacgatatcggtctgcagcagtttcaaggacagcttgaaggaggacagcaagca
acatactttactctttcgatgcatggttctgagtttactgcctctccagctggggcctgg
tataatttcaacaaagtagcccactacaagcagttaacattggaggaagcggaggagcaa
atgaaaaatcgtcgtaagacagctgatggctaccaaagatggatgatgaaagcttctaat
ccagatatagacaagctgcctggttctgggggtgctggtggagggcgtggcaggaaagtg
ggtgctgatgacgatgacatgggttctgataagggggaggatgaggatgaagagtttgga
gggaagaagaggttaaatttgaataaaactgctaaaggaggtgatgacgatggtgaagat
gctgcaaacgacatagacatggatgaggaggagccagaacgaggtgatgattgggaacat
gaagaaacgtttacagatgatgatgaggcagtgggcaacgatccagaagagcgggaggag
caagttcctgaaggaccagctccaccagaaatcaaacaggaagaagaagacgaagaagat
gagaaagaggggcagcagaacgaggaggggcaaggaggtttaagtaagtccggtcgtgag
ctcaagaagttgcttggtaaacagggtttcgatgactctgatggtggtgacaatgataaa
caagctctagacgaatctgatggtgatgacgatgttgacttggacaatgacgaagtagga
atgtccccagttttagctccagcattgaaaaagaaggatgcccccaaggaaactcccgca
gaacctactccagctaaagcagggaacgtgaaatcagcggcagctggctcatcaaaggga
aagcggaaagctcctgctgcaggagatgacaccaaactcatcagcaacaagaaggccaaa
gcaggagatgcggataaggggtcgaaaacagctgcggggaaaaaggaatctaacaaaaat
gcgcctgctaaaggaacacctgctccagcttctgcagctgctaagcctgcggcagctgca
ggaaatttggaagatgaagtgaaagctttcttacgacagactggccccgtgaagagcaat
gagctggttaccaggttcaagaaccgactaaaatccccagaggacaagtctgcttttgct
gcaatgttgaagagaatatctcgtatcgataaaaaggatggtgtaagttatattgttttg
cgctag
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