Physcomitrium patens (spreading earthmoss): 112281035
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Entry
112281035 CDS
T01041
Name
(RefSeq) sm-like protein LSM7 isoform X1
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018
RNA degradation
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112281035
09123 Folding, sorting and degradation
03018 RNA degradation
112281035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112281035
03041 Spliceosome [BR:
ppp03041
]
112281035
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112281035
mRNA degradation factors
5'-3' decay
Lsm complex
112281035
Spliceosome [BR:
ppp03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
112281035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
112281035
NCBI-ProteinID:
XP_024372934
LinkDB
All DBs
Position
4:6963702..6966325
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AA seq
170 aa
AA seq
DB search
MTAVSVETNEFLSRRFLIRSSSGDAEIFRVIRFGPVLEIPDELQLQLCIKVSSWPLLLDC
AASSVFINMSGRKETVLDLAKFVDRGVSVKLSGGRQVTGILKGYDQLLNLVLDEATENLR
DSDDPMKTTDQIRQLGLIVCRGTAVMLVAPTDGTEEIPNPFLQNETPAAT
NT seq
513 nt
NT seq
+upstream
nt +downstream
nt
atgactgctgtgtcagtggaaacaaacgaatttctcagtcgtcgttttctcattcgttca
tcatccggcgacgctgaaatattccgcgtaatccgatttggtccggtattggagatacct
gatgaacttcagttgcagctttgcattaaagtgtcgtcttggcctctgttgcttgactgc
gctgcatcttccgtttttatcaatatgtcaggaaggaaagagactgtgctggatctggcc
aagtttgtggataggggagtgtcggtgaagctgagtggtggtcgacaagtgacaggaatt
ttgaaaggatatgaccaacttttgaatttggtgcttgacgaggccacggaaaacttgaga
gactcggacgatcctatgaagaccacggaccaaataagacaattgggcttgattgtctgc
agaggaactgctgtcatgttggttgccccaacagatggtactgaggagataccaaatccg
tttcttcaaaacgagacccccgccgctacttga
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