Physcomitrium patens (spreading earthmoss): 112281267
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Entry
112281267 CDS
T01041
Name
(RefSeq) squalene synthase 8 isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp00100
Steroid biosynthesis
ppp00909
Sesquiterpenoid and triterpenoid biosynthesis
ppp01100
Metabolic pathways
ppp01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
112281267
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
112281267
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
ppp01006
]
112281267
Enzymes [BR:
ppp01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
112281267
Prenyltransferases [BR:
ppp01006
]
Terpene biosynthesis
Squalene/phytoene synthase
112281267
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
DUF5601
Motif
Other DBs
NCBI-GeneID:
112281267
NCBI-ProteinID:
XP_073389254
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Position
4:1504225..1508514
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AA seq
407 aa
AA seq
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MGLMETLVKHPDEIRPLVKLKVDAMRAQRAIPKDPYLAFCYRMLMRVSRSFSIVIQQLRT
ELRDAVCVFYLVLRGLDTIEDDMAIPIDIKVPILKSFHEHIYDPSWKFVCGEKDYKELMN
KFECVSNAFLNLDEGYQRVIAEMTNRMGVGMAKFIETEVLTVEDYNEYCHYVAGLVGLGL
TRLFHASGLESFQPDDLSNSMGLFLQKANIIRDYLEDINEIPAPRMFWPHEIWGKFGTRL
EDFKLEENSENAVRCLNAMITNALTHATDCLKYIEANKDESNLRFCAIPQIMAIGTLAEC
YNNINVFRGVVKIRRGITAKVMQTKTISDVYGTFFDFSRKIAEKIGENDDSASATRKHIE
DIQEYCESHLLETRVYSIDQEYGLDILVFLVVFSLLSAMVYMLYNHW
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggggttgatggaaacgttggtgaagcatccggacgagattcggccgctggtgaagctg
aaggtcgatgcaatgcgggcgcagcgggccatccccaaggacccctacttggcgttctgc
taccgtatgctcatgcgcgtctcccgcagcttttctattgttattcagcagctgaggacc
gagcttcgtgatgctgtttgtgtgttctatttggtgttgagaggcctggatacaatcgag
gacgacatggcaattccaatagacatcaaggtccccatcctcaagtcgtttcacgagcat
atttatgacccttcgtggaagttcgtttgtggtgagaaggattacaaggagttgatgaac
aaattcgaatgtgtgtcgaatgccttcttgaatcttgacgaggggtatcaacgtgtgatt
gctgaaatgacaaaccggatgggagttggcatggctaagtttattgagactgaggtgttg
acagtagaggattacaacgagtattgtcactacgtcgcaggccttgtgggcttaggattg
acccggctgtttcatgcctctggtcttgagagctttcaaccagatgacctctcaaactct
atgggcctcttccttcagaaagcaaatatcataagagattacctggaggacattaatgag
attcctgcacctcgaatgttctggccacatgaaatctggggcaaatttggaactagactg
gaggacttcaagcttgaggaaaactcagaaaatgctgtgcggtgcctgaatgcaatgatt
acaaatgctctaacgcacgcaacagactgcctcaaatacatagaagcaaataaagatgaa
tctaatcttcgattttgtgccattccccagattatggcgattggaacccttgcagagtgc
tacaataatattaacgtcttcaggggagttgtaaagattaggcgaggaataaccgccaag
gttatgcagactaagacaatatccgacgtgtatggaactttctttgatttctccagaaag
attgctgagaagattggtgagaatgatgattcagcatcagcgactcgcaaacatatcgaa
gacatacaggagtactgtgaatctcacttacttgaaacgcgcgtatattccatagatcaa
gaatacggactagacatcttagtgtttcttgtggttttctcgctcttgagcgccatggtc
tacatgctttacaatcactggtag
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