Physcomitrium patens (spreading earthmoss): 112281443
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Entry
112281443 CDS
T01041
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112281443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppp03021
]
112281443
03041 Spliceosome [BR:
ppp03041
]
112281443
03036 Chromosome and associated proteins [BR:
ppp03036
]
112281443
Transcription machinery [BR:
ppp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
112281443
Spliceosome [BR:
ppp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
112281443
Complex B
112281443
Complex C
U2 SnRNP specific factors
112281443
Chromosome and associated proteins [BR:
ppp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
112281443
TFTC complex
112281443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Beta-prop_LRRK2
Motif
Other DBs
NCBI-GeneID:
112281443
NCBI-ProteinID:
XP_024373728
UniProt:
A0A2K1KMB4
LinkDB
All DBs
Position
4:complement(3648762..3654043)
Genome browser
AA seq
1214 aa
AA seq
DB search
MYLYSLTLQSATGIVCATYGNFTGGKTQEIVVARGKVLDLLRPDDNGKLQTMLSVEIFGA
IRSLTQFRLTGSQKDYIVVGSDSGRIVILEYNKEKNLFEKVHQETFGKSGCRRIVPGQYL
AVDPKGRAVMISACEKQKLVYVLNRDNAARLTISSPLEAHKSHTIVYSITGVDCGFDNPI
FAAIELDYSEADQDPTGQAANEAQKHLTFYELDLGLNHVVRKWTEPIDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQNHPDIRAVIPRRQDLPPNRGVLIVSAATHKQKALFFFLLQ
TEYGDIFKVTLDYDKDDQVTELKVKYFDTIPVTSAMCVLKSGFLFAASEFGNHSLYQFQS
IGDDPEVESSSSTLVETEEGYQPVFFQPRKLKNLVQIDDIESLMPIMDMKVANIFEEETP
QIFSLCGRGPRSSLRILRPGLAVTEMAVSPLPGVPSAVWTVKKHANDEFDAYIVVSFVNA
TLVLSIGETVEEVSDSGFLDTTPSLAISLLGDDSLMQVHPSGIRHIRSDGRINEWKTPGK
KTIVKVGYNRMQVVIALSGGELIYFEMDMSGQLMEIEKRDMTGDVACLDIAPVPEGRQRS
RFLAVGSYDSTIRILSLDPDDCMQILSVQAVSSPPESLLLLEVQASTGGEDGADHPASVF
LNAGLQNGVLLRTEVDMVTGQLSDTRTRFLGLRAPKLFSALVRGRRAMLCLSSRPWLGYI
HQGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNQTVVPLRYT
PRKFILHPKQKTLIILESDEGAFSTEEREANKKEAVEATGGHENGKADGEDEEMADEESE
DPLPDEQYGYPKAEANKWVSCIRVLDPKTSTTTCLLELQENEAAFSICTVNFHDNKELGT
LIAVGTAKDLQFMPRKEASGGFIHIYRFAEEGRVLELVHKTPVDGVPTALCQFQGRLLVG
VGQVLRIYDLGKRKLLRKCENKNFPNTIIAIHTYGDRIYVGDIQESFHYVKYRRDENQLY
TFADDSCPRWLTASLHIDFDTMAGADKFGNVYVMRLPQDVSEEIEDDPTGGKIKWEQGRL
NGAPNKVDEIIQFHVGEVVTSLQKASLIPGGGESMLYGTVMGSMGALLPFSSREDVDFFS
HLEMHLRQENPPLCGRDHMAFRSAYFPVKDVIDGDLCEQYSMLTSELQKKIADDLDRTPG
EIVKKLEDIRNRII
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtatttgtacagtttgacgttgcagtcggcgacaggaatagtttgtgcgacgtatggc
aacttcacgggtggcaagacgcaggagattgtggtggctagaggcaaggtgctggacttg
ctgcggcctgacgataatgggaagctgcagacaatgctctcggtggaaatatttggagcc
attcggtcgctgacgcaatttcgcctcaccgggtcgcagaaagattatattgttgtagga
tcggactcgggtcgaatagtgattctagagtataacaaagagaagaatctgtttgaaaag
gttcatcaggagacgtttgggaagtcggggtgtcggaggatcgtgcctgggcagtattta
gcagtggatcctaaggggcgtgctgttatgatcagtgcttgtgagaagcagaagctggtt
tatgtactcaatcgtgacaatgctgcgcgcctgaccatttcctcccccctggaggctcac
aaatcgcatacaattgtttattctatcacaggtgttgattgtggatttgataaccctatt
ttcgcagctatagagctagattattcagaggcagaccaggatcctacagggcaagcagca
aatgaagcgcaaaagcacttgacgttttatgaactcgatttagggctgaaccatgttgtt
cggaaatggaccgaacctattgataatggagctaatatgttggtcacagtacctggtgga
ggggatggaccgagcggggtgctcgtttgtgcggaaaattttgttatttacaagaatcaa
aatcatcctgatattcgcgcggttattccacgaaggcaggatctgcctccgaatagagga
gtattgattgtttctgctgctactcataagcagaaagctctgttcttcttcttattgcaa
accgaatacggtgacattttcaaggtcaccttggactacgacaaggatgatcaagtgaca
gagttgaaggttaagtacttcgacaccatccctgtgacatccgcaatgtgcgttctaaaa
tctggttttcttttcgccgcttcggagtttggaaaccattctttgtatcagtttcaaagc
atcggtgacgatccggaggtggagtcgtcgtcttctactcttgtggaaactgaggagggt
taccaacctgtgttcttccagcctagaaaattgaagaatctggtacaaattgatgacatt
gagagcctgatgcctattatggacatgaaagtggcaaacatttttgaagaagagactccc
caaattttctccttgtgtgggaggggtccaagatcatctcttcgcatcctacgtcctggc
cttgcagtgacagaaatggccgtgtctccgcttcccggagtaccaagcgccgtgtggacc
gtcaagaagcacgcaaacgatgagttcgatgcttacatcgtagtgtcgtttgtgaatgct
acactggtgctctccattggagagaccgtagaggaagtaagcgatagtggcttcttggac
acgactccttccctagcaatttcacttctgggtgacgactctctcatgcaggtgcacccg
agtggtattcgccatatcaggtccgatggacgtatcaacgagtggaaaacaccaggaaag
aagacaatcgtgaaagtcggatacaatcgaatgcaggtcgttatagcccttagtggggga
gagcttatatattttgagatggacatgtcaggtcaacttatggaaattgagaagcgggat
atgacgggagatgtagcttgtcttgacattgcgcctgtgcctgaaggtcgtcaaaggtca
cggttcttagctgttggttcgtatgacagtacaattcgaatcctgtccctggatccagat
gattgtatgcagattttgagtgtgcaagcagtctcatctcctccagaatcgctacttctc
cttgaagtacaggcttcgacgggaggtgaagatggcgcagatcacccagctagcgtcttt
ctcaatgcgggtttacaaaatggagtactgcttaggacagaggtagatatggtgactgga
cagctttcagacactcgtacccgatttttaggtctgcgagcccctaagctcttctcggct
ttagttaggggcagacgggcaatgctatgtctttccagccgaccttggctcggttatatt
catcaggggcatttcttattgacgccgttgtcatatgaaaccctggaatatgcagcatcg
ttttcctcagatcagtgtgcagaaggtgtcgtggcagtggctggagatgctcttcgcgta
tttactattgagagactcggcgagacatttaatcaaacagttgtgcccctccggtacacc
ccgcgcaaattcattcttcatcccaaacagaaaactctcatcatcctcgagagtgatgaa
ggtgcttttagtacagaggagcgggaggcgaataaaaaggaagcagtggaagctacaggc
ggccacgaaaatgggaaagcagatggagaggatgaagaaatggctgatgaagagagtgaa
gaccctcttcccgatgagcaatacggctatccaaaagcagaagcgaacaagtgggtgtcg
tgcattcgagtattggatccaaagactagcacaaccacatgtcttctagagttgcaagaa
aatgaagcagccttcagtatttgcactgttaatttccacgataacaaggaattagggacc
ctcatagctgttggaaccgccaaggatttacagtttatgccgaggaaagaggcatccggt
ggatttatacacatatacaggtttgcggaagagggtagagttcttgaacttgtgcataag
actcctgttgacggggttcctactgctttgtgtcagtttcaaggtcgacttttggtcggg
gtaggtcaggtcctgagaatatacgatcttgggaaaaggaagctgcttcgtaagtgcgag
aataaaaatttccccaacacaataattgcaattcatacctatggggacagaatatatgtg
ggtgatattcaagagtcattccattatgtgaagtatcgacgcgatgaaaaccaattgtac
acttttgcggatgatagctgcccaaggtggttgactgcgtcactgcacattgattttgac
accatggctggagcagacaagtttggaaatgtttatgtcatgcgcttacctcaagatgtt
tcagaggagatagaagatgaccctaccggtgggaaaattaaatgggagcaaggacgatta
aatggtgcaccaaacaaggtcgacgagattattcaatttcacgtgggagaggtagtcaca
agcttgcaaaaagcatctctcattccaggtggaggggagagtatgctttacggcactgtc
atgggaagcatgggagctctgttgccattttcatctcgtgaagacgtagactttttctcc
caccttgagatgcacctgcgacaagaaaacccacctctgtgtggtcgtgatcatatggca
ttccgatctgcatatttccctgtcaaggatgtaatcgacggagatctctgtgagcagtat
tcaatgcttacatcggagttgcaaaaaaaaattgccgatgatcttgaccgaaccccaggt
gaaattgtgaagaagctcgaggacatcaggaaccgaattatttaa
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