Physcomitrium patens (spreading earthmoss): 112281688
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Entry
112281688 CDS
T01041
Name
(RefSeq) phytochrome 1
KO
K12121
phytochrome B
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
112281688
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Ortholog
Paralog
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
HATPase_c
GAF
HisKA
PAS_4
PAS_9
PAS_8
Motif
Other DBs
NCBI-GeneID:
112281688
NCBI-ProteinID:
XP_024374264
UniProt:
A9RK23
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All DBs
Position
4:complement(10720363..10725256)
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AA seq
1124 aa
AA seq
DB search
MTSTKLSYSLGTTVKSKHSVRVQQTTADAKLQAVYEESNDSGDAFNYSKSVGQAAKATVQ
QVPAQAVSSYLQRMQRGGLTQTFGCMLAVEESTFRVIAYSENAPEMLDLVPHAVPSVGQQ
DVLGIGADARSLFTPSSASALERAASTSDLSMVNPISVHSRSSGKPFYAIVHRIDVGVVI
DFEPVRPNDVIISTAGALHSHKLAAKAVARLQSLPGGDIGLLCDAVVEEVRELTGYDRVM
AYKFHDDEHGEVLAEIRRSDLESYLGLHYPSTDIPQASRFLFMKNRVRMIADCCAPPVKV
IQDKDLRQPITLAGSTLRAPHGCHAQYMGNMGSVASITLAVIVNDQEEDFGVQQKGRRLW
GLVVCHHTSARTISFPLRSACEFLMQVFGLQLNMEVELQAQVKEKHILRTQTLLCDMLLR
DAPIGIVSQSPNIMDLVKCDGAALYYGKRFWLLGTTPTEQQITEIADWLLEYHKDSTGLS
TDSLADAGYPGANLLGDAVCGMAAARITPKDFLFWFRSHTAKEIKWGGAKHDADEKDDGR
KMAPRSSFNAFLEVVKRRSVPWEDIEMDAIHSLQLILRGSFQDIDDSDGKTMIHARLHDL
KLQGMDELSTVANEMVRLIETATVPILAVDSSGFINGWNAKVAELTGLPVGDAMGRSLVK
DLILEESVEAVERLLYLALQGEEEQNVEVRLKTFGQQKSKGVLILIVNACSSRDVQENVV
GVCFVGQDVTGQKMVHDKFTRIHGDYKSIVQNPNPLIPPIFGGDELGYCTEWSPSMEKLT
GWKREEVLGKMLVGEVFGVQLMCCRLKGQDAVTKFMIVLNNAMDGQDTDKFPFSFFDRQG
KFVEALLTANKRTDADDYITGVFCFLHTASPELLQALTVQRATEKVAFAKLKELAYIRQE
IKNPLYGIMFTRNLMEDTDLSEEQKQFMDTSAVCERQLRKILDDMDLESIEDGYLELETA
EFDMGSMMDAVVSQGMITSREKGLQLIRETPREIKGMCLFGDQVRLQQVLADYLLNAVRF
TPSSEGWVGIKVVSTKKRLVGGFHVVHLEFRVTHPGSGLPEELVCEMFDRGRGMTQEGLG
LSMCRKLVKLMNGEVKYIRDAGKSYFLVNLELPLAGRDDSGNAR
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccactaagttatcctactcgttgggaaccaccgtgaagtcgaagcacagcgtg
cgagtgcaacaaaccaccgcagatgctaagcttcaagctgtgtacgaggagtcgaatgac
tccggagacgcgtttaattactcgaaatcagtcggtcaagctgccaaagcaaccgtgcag
caggttcccgcacaagctgtgtcatcatatcttcagcgcatgcagagagggggtctcacc
caaaccttcggatgcatgctcgccgtcgaggagagtaccttcagggttattgcatacagt
gagaatgctcccgaaatgctcgatttagtgccacacgctgtaccgagcgttggacaacag
gatgtactcggaattggagctgatgcaagatcgttgttcactccctcgagcgcatccgcg
ttagaaagagccgcatcaacatccgatttgagcatggtaaaccccatctctgttcactct
cgaagctcagggaagccattttacgctattgtgcaccgcattgatgtgggggtagtaata
gactttgagcctgttcgaccgaacgatgtcattatctccacagctggggctctccattcc
cacaaattggcagctaaagcagttgcgcggctacaatcccttcccggaggcgacattggg
ctactgtgtgatgcagttgtggaagaggtccgtgagctcacaggctacgaccgagtgatg
gcgtacaaatttcacgatgacgagcatggggaggtcctcgccgagattcggagatcagat
ttggaatcctacctaggcttgcattatccctccacagatataccgcaagcatcgaggttt
ctgttcatgaaaaacagggtgcggatgattgcggattgctgcgcgcctcctgtgaaggta
attcaagacaaggacttgcgtcagccaatcactcttgcgggatccactttgcgagcgcct
cacggctgccatgctcagtacatgggcaatatgggttcagtcgcttcaattactctggct
gtcatcgtaaatgaccaagaagaggacttcggagtgcagcagaaaggccgtcgactgtgg
gggctggttgtctgtcatcacacgtccgctcggacaatctccttccctctccgatcggcg
tgtgagttcttgatgcaggtgttcggattgcaacttaatatggaagtagagcttcaagct
caggtgaaagagaagcacatattacgaacgcagacattgctatgtgacatgctcttgcgt
gatgctcctatcggcattgtgtcgcaatctcccaacattatggatctagtcaagtgcgac
ggagcagctctctattacgggaaacgtttctggctcctggggaccacaccaactgagcag
caaatcaccgagattgcagactggctgttggagtatcacaaggattctacaggattgagt
acagatagcctggcagatgcaggctaccctggcgcaaacctgcttggtgacgccgtatgt
ggtatggctgctgcaagaatcactcccaaggattttctgttttggttcagatctcatact
gctaaagagattaagtggggtggcgcaaagcacgacgcggatgagaaggacgatggtcgg
aagatggctccccgatcttcgttcaacgctttcttagaagtcgtaaagaggcgtagtgtt
ccttgggaagacattgaaatggatgcgatccactctctgcagctcatattgagggggtct
ttccaagacattgacgatagcgatgggaaaacgatgattcatgcgcggcttcacgatttg
aagctccagggtatggacgagcttagcaccgttgctaatgaaatggtcaggttgatagag
actgcaactgtgcccattcttgcggtggactcaagtgggttcatcaatggatggaatgcg
aaagtagcagaactgacaggactcccagttggagatgccatgggccgctccttggtaaag
gatttgatcttggaagagtccgtggaggctgtcgagcggctgctgtacctagcgcttcaa
ggtgaagaagagcaaaatgttgaggttcgtttgaagacatttgggcagcaaaagtccaaa
ggcgtattgatattaatagtcaatgcctgttcaagtcgggatgtgcaagagaatgtggtt
ggcgtatgtttcgtgggccaggacgtgacagggcaaaagatggtgcatgataagtttaca
cgcattcatggtgactacaaaagcattgtgcagaacccaaaccctttgatcccacccatc
tttggaggcgatgaactaggatactgcaccgaatggagcccttcaatggagaagttgaca
gggtggaagagggaggaggttctcgggaaaatgctagttggagaagtctttggtgtacaa
ctcatgtgttgccgtctgaagggccaagatgcagtaacgaaattcatgatcgtcctcaac
aatgccatggatggtcaggacacagacaagtttccgttttcgttttttgaccgtcagggg
aagtttgtggaagctcttctgacagccaacaagaggacggatgcagatgattacatcaca
ggagtgttctgttttctacacactgcaagcccagagttattgcaggcattaactgttcaa
cgagctactgagaaagtagcgtttgccaaactcaaggagcttgcgtacattcgacaggag
attaagaatcccttgtatggaatcatgtttactcgaaatttgatggaggacacagatttg
tcagaagaacaaaaacagtttatggacactagcgcagtctgtgagcggcagttgcggaaa
attttggatgatatggaccttgaaagtattgaagacgggtatttggagttggagacagcc
gagtttgacatgggatctatgatggacgctgtggtgagtcaaggaatgataacatcgagg
gagaaaggccttcagttaattcgtgaaacccctcgggagatcaaaggcatgtgcttattt
ggggaccaagttcgattacaacaagtcctcgcagactacttgttgaatgcagtgcgtttc
accccttcttctgagggctgggttggcatcaaagtggtctcaacgaagaaacgcctagtt
ggtggcttccacgttgtgcatttagaattcagagtcacacatccgggatcaggacttcca
gaggagcttgtctgtgagatgttcgaccggggccgtggcatgactcaagaaggactcggg
ctgagtatgtgtcgcaagctcgtaaaactaatgaacggtgaagtgaaatacatcagagac
gccggcaaaagctatttcttagtcaacctggagcttccattggccggaagagacgattct
ggcaacgcgaggtag
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