Physcomitrium patens (spreading earthmoss): 112281995
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Entry
112281995 CDS
T01041
Name
(RefSeq) uncharacterized protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112281995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112281995
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112281995
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112281995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
NOT1_connector
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
112281995
NCBI-ProteinID:
XP_024374833
UniProt:
A0A2K1KIP2
LinkDB
All DBs
Position
5:complement(4580509..4599103)
Genome browser
AA seq
2520 aa
AA seq
DB search
MIPCGSPLAAQIGFQVANLSKDNYKSVVKELYELISYGPDGSIILLRSCLEQVNLAENDQ
NLQVKLDLLAIVIRDLIRQPNLGTVLCEALQNLPSVSEEFLANLCRALDLSLSEQLALGL
ALADAEDNSQRQQGQAFLETKVTEWCHTPTSDLSEDLIERILWCLYSSESLLELRSSFLK
SLHALQPFAVDSLTLTPFLKDVNKEVDCLRDYDVAKKSGSLLSETLLMELERATDVVSLL
EELGFDCTYSVDHCKEILSQGGPLIESDIARILGTVARTAKGFEEVQSIHGPFYNLLCSG
EPIPSKLTTWHVEILLGAINQLNPSMDWSLIVSSLDYEGFFLSDEHAFTLFMTMYKLGCE
DPFPIDAVCGRVWKNYEGQLSFLRHAISATPEVFTFAHSTRKLTETHEGKLKSPNHAWLS
LDLLEALCRLAEVDRSDQVHEILEFPRNHCPELLALGLVQVNIGVSLKGSQESFREEMLS
LVLRPLFAQINLTTEGETVDPLWSKLWSLNSDALKMEMVNYLCSGDPSAYDQVTQVCRGL
KVLPAVLDSMPSKVALKLAVFAARKGVLNLEKWLEEELTIHRDSFAAVCLSFLQKKNSMF
DEMNGSIEHSGNQLSDISAAILKVLYAASGLLSSGDLVNRIVRARGSENLKSLDAGLASI
EASPQENDVDKEANSYFERVYRGEVPVQTVVNMLQQFNQSPPNSREKAIFSRMVSCLFDE
LPHLNQFPEKALAVTAVLFGSLIKHQLVSTSTLEKALTCILGALTKPVGTKMFSFAIQAL
DSFRERLKEWPEFCYHILQVPHIREAQNELVDFIMNIVKANHVADPNSVNDSNEPSVVAL
PSTVNAPRSVLQDSQDEIFNSAFAAVDPAGNRFSSSQLRYLSGQGLEALLQSPAGNFPSG
AGTQPQNGTQSVAQSNLDSLLSSQAGFRTSSESPFQSISRTSSTTLSQHPQSQYSSVEET
PDGARSDAQVMQNATTSNLQANRASEVAVSQQQSSTESTNLSAAAPYFPFSAAPNGQTNQ
ASMRTSARSANVSGSLRTAISGFGHALNIETLVAAAGKRDKPIEAPSSEIQDKVAFIINN
ISWTNLEAKAKECAEILKEEYHPWFAQYVVMKRASIEPNNHDTYIKFLDKIGSKELHKEV
LKTTYENCKVLLASNLIKTHSEERSLLKNLGSWLGKLTIRRNQSLRARELDPKSLIIRAY
QKGLMIAIIPFTSKVLEPCNQSLAYQPPNPWTMAILSLLVEIYNLPNLKMNLKFDIEVLF
KNLNVDMKEVKPSKLLEGLEREVEGNPDFSNKDPVFSQSPSPALSANNSSQSVTVPSLPQ
QLDIPPELPIPTQPATSLASSVISQLIEEERPSLALDRSQNGQASSISSQPSFSSSQVSM
AIPDLTSYVVLNPKFTGLGQQLQLARIVPLAMERAIREIISPVVDRSVTIACMTTRELVV
KDYAMEADETRTNQSANLMVASLAGSLAHVTCKEPLRVSMANYLRTFLQTALAQDVLEQA
VNLVTNDNLDLGCAVIEKAATEKAQRDLEEVIAPVLALRRTDRLRLGSAYYDKYTYANRN
LSSLPEALRPRPGRLSAAQARVYEDFARLPWQNQPSHTPVTSASPPGITSLSGRGIYAVP
SREAGANSIASFNVNQSSSVLGATSQVSDLSSDELDIREPSPISFSSTASVGGADGQSRH
SLETPLPFPTYSSASTPPPELTAVETPNTSKGTLGTTPSSTPPLPTEHIGSTVQEPSLTT
GEALEKFSSVAQKLDLALSRASSFSPSLPLDDEVRVPVNEVPEIILQCVSRDEAALAIAQ
KVFKRLYENTTSQLHVVVHLSILESIRDVCRRVVKELTSWVVYSDEDRKFNREITVGLIR
SELINLTDYSLHLTKWIDGGRNKDAVDFAAYLVKTCVIEEAGVTSTEFYNVIDALGKLAA
RPGSPESLQQLVEIAKGTPSANKDEKGRLSKEKKLPSSRSAGLRDDGKSGMRETADPPGL
REQATQFFQEWARICTTPGGPNEKANSIYISQLQSTGMLKGDDVTDRFFRILIELAESHC
LNSETPQPTTAVGESRQQGGSTMSFAAIDMVAKLVVLLVKYSSEPSLNKVNLLTKVLNVT
VRVMKRDHDRKAGFHPRPYFRLFVTWLLDFNSSDSTLDSSNFQVLQAFANAFLALQPLEI
PGFSFAWLELISHRTFMPKLLLSNSQKGWAPFQKLLVALFKFMEPYLRKADLSEPVRVLY
KGTLRVLLVLLHDFPEFLCDHHFSFCDVIPPSCIQMRNLILSAFPRNMRLPDPFTPNLKV
DLLPEISMSPRILSDVEGALKAKQLKSEVDDFIKNRNQATLLSMDLKGRLTLSTQEAQAS
GTRYNVPLLNALVLYVGMQAVQQLHSKTSQQLAALTAPITHSAPMDIFQRLVNDLDTEGR
YLFLNAVANQLRYPNNHTYYFSCVLLFLFAEASLEIIQEQITRVLLERLIVNRPHPWGLL
ITFIELIKNPRYSFWTHGFTRCAPEIDKLFESVARSCMNSTLKPSDDDLPGNLPADGLKG
NT seq
7563 nt
NT seq
+upstream
nt +downstream
nt
atgattccgtgtggttcacctcttgcagctcagattggttttcaggttgctaatctgagc
aaagacaattacaaatctgtggttaaggagctctacgagttgatcagttatgggccggat
gggagtatcattctattacgaagttgtcttgagcaagtcaatttggcggagaatgatcaa
aatctgcaagtaaaactcgatctgttggcaattgtcattcgggatttgattcgccagccc
aatcttgggactgtattatgcgaagctttgcaaaaccttccatctgttagtgaagagttt
ctagctaatctttgcagagcgctggatctatctttatcggagcaacttgctcttgggctt
gcccttgcagacgcagaagataatagtcaacgtcaacaaggtcaagcatttttggagacg
aaggttacggagtggtgccatactccaacgtcagacctttcagaagatctgattgaaagg
attttatggtgtttgtattcaagtgaatcacttctggaacttcgatcgtcttttttgaag
tccttgcatgctttgcaaccgtttgcagtcgattccttaacgctgactccctttctgaag
gatgtcaataaggaagtggactgcttaagagattatgatgtagccaagaaatctggatcg
ttgctttcagaaaccttattgatggagttggagcgtgcgactgacgtggttagcttacta
gaggagctcgggttcgactgcacatatagtgttgatcattgcaaagagattctgtcacag
ggtggtcctcttatagaaagcgacattgcacggatattgggtacagtggctcgaactgcg
aagggttttgaagaggttcagagcatacatgggccattctacaacttactttgcagtggg
gagccgataccttcaaaattgaccacttggcacgtggaaattcttttgggtgccattaat
caattgaacccgagtatggattggagtttgatagtgtcgagtctggactacgagggattc
ttcttgtccgacgaacacgccttcactctatttatgactatgtacaaactgggttgtgag
gatccttttcctatcgatgctgtttgtggccgtgtgtggaagaattatgagggtcagtta
tctttcttgagacacgcaatttcagcaactccagaggttttcacttttgctcattcgaca
cgtaaactgacggagactcacgagggaaaattgaaatcacctaatcatgcctggctttct
ctagatctgcttgaagcgctttgtcgccttgcagaagtggatcgttctgatcaagtccac
gagattttggaattcccccgtaatcactgtccagagcttctggctttgggacttgtgcag
gtcaatattggtgtatccttgaagggttcccaagaaagctttcgggaggaaatgctgtca
ctggtacttagaccattgtttgcacaaattaaccttactactgagggtgagactgttgac
cctttatggagtaagctatggtccctgaactcagatgcgctgaaaatggaaatggtgaat
tacctctgctcgggggatccctctgcatatgaccaggttacgcaggtctgcagaggcttg
aaggttttacctgcagtattggacagtatgccttcgaaagttgcactcaagcttgctgtg
ttcgctgcgagaaaaggtgttttgaacctagagaaatggctggaggaagaattaaccatc
caccgagactcttttgctgcagtttgcttaagtttcttgcagaaaaagaactccatgttc
gatgaaatgaatggatcaattgaacattccggaaaccagctctcggatatttctgctgct
atattgaaggttctgtacgctgcctcaggtcttttatcttcaggggatcttgtgaatagg
attgtcagagccagaggaagtgagaatttgaaatcgttagatgcaggcctggcttctatt
gaagcatcaccacaagaaaatgatgtcgataaagaggcaaattcttattttgaacgtgtg
tatcgtggagaggttcctgttcaaactgtcgtcaacatgcttcagcaattcaatcaatca
cctcccaactcgcgtgaaaaggccatattttctcgaatggtatcttgtctatttgatgaa
cttcctcatttaaatcagtttccagagaaagctttggctgttacagcagttctttttggg
tccctgatcaagcaccagctggtttcaaccagtacacttgaaaaagccttgacatgcatt
ttgggggctcttacgaaaccagttgggacaaagatgttctcgtttgctatacaggcgtta
gattcgtttcgcgaacgtctgaaagagtggccggagttttgctatcatattctacaagta
cctcacattcgtgaggctcagaatgagcttgtggacttcattatgaatatagttaaagcg
aatcatgtagcagatccaaattctgtgaatgattctaatgagccgtctgtggtagcactt
ccatcaactgtaaatgcaccaaggagcgttttgcaggactcccaggatgaaattttcaac
tcagcgtttgctgctgttgatccagctggtaacaggttctcaagttctcagttacggtat
ctgtctggacagggtttggaggcattacttcaatcacccgcgggaaacttcccttcaggg
gccgggacacagccacagaatggcactcagtctgttgcacagtcgaatttggattcattg
ttatcgtcacaggcaggatttcggacaagctctgaatcaccatttcaatcaatatcccgg
acatcatcgacaactctttcacaacatccgcaatctcagtactcctcagttgaagagacg
cctgatggtgccaggtctgatgcacaagtgatgcagaatgcaactacttcaaacttacaa
gccaatcgagcctctgaagtagcggtctcacaacagcaatcaagtacggagtcaaccaat
ctttctgcagcagccccttatttcccattctcagcagctccaaatggtcagacgaaccaa
gcttccatgcgaacaagtgctagatctgcaaacgtctcaggttcactccgtacagctatt
tctggatttggacatgctctcaatatagagactcttgttgctgctgctgggaaacgagac
aagcctattgaggcaccaagttcagagattcaggataaagtagcatttataatcaacaat
atatcttggacaaatctggaagctaaagcaaaggaatgtgccgaaattctgaaggaagaa
taccatccatggtttgcccaatatgttgtaatgaaaagagcaagcattgagccaaataat
catgatacgtacatcaaatttttagacaagataggttccaaggagttgcacaaagaagtt
ctcaagacaacttacgaaaattgcaaggttttactggcctcaaacttgatcaagactcac
tcggaggagaggtcccttctgaagaatttaggaagctggcttggaaagttgaccattcgg
cggaatcaatcgttgcgagctcgcgagcttgacccgaagtctcttattatcagagcatat
caaaaagggcttatgattgcaattattccttttacatctaaggtgctggagccctgtaac
cagagtctggcttaccagcctccaaatccgtggactatggcgatactcagcttactcgtc
gagatttacaatttgcctaacctgaagatgaatctgaagtttgatattgaggttcttttt
aagaatctaaatgtggatatgaaggaagtgaagccctccaagcttctcgagggtctggag
cgtgaggtggaagggaacccggatttttctaataaagatccagtattttctcaatcaccc
tccccagctttgtctgccaataattcttcacaatcggtgactgttccatcattgcctcag
cagttggatattcctcctgaacttccaatccccacccagcctgccacatcattggcttcg
tcggtaatttcacagttaatcgaggaagaaagaccgtctcttgctttggatcgcagccag
aatggccaagcttcgtccatttcatcccagccatctttctcgtctagtcaggtttcaatg
gcgattcctgatttgacttcttatgtggtcttaaatccgaagtttactggccttggtcaa
cagcttcagcttgcgaggattgtgcctctggccatggagcgcgccattagggaaatcata
tctcctgtggtagatcgaagtgtgacaattgcttgcatgaccactagagagcttgttgtt
aaggattacgcaatggaagcagatgaaactcgtacaaaccagtctgccaatttgatggta
gctagtctggcaggcagtttggctcatgtcacttgcaaggagcctttgcgagtttccatg
gcaaactatttgaggacgtttctgcagacagctctcgctcaagatgtgctagagcaagct
gtgaatttagttacaaatgacaatctggacttgggttgtgctgtgatcgagaaagctgct
actgagaaggcacaacgagatttagaagaagtgattgctcctgtactggcattgcgaaga
accgatagattacgcttgggttctgcctattacgataaatacacttacgcaaatcgaaat
cttagtagccttcctgaggctctgcgtccaagaccagggcggttgtctgctgcacaagca
cgcgtgtacgaggattttgcacgcctcccctggcaaaatcagcccagtcatacccctgtt
actagcgcaagtcctccgggaatcactagtctttcgggtagaggcatttatgctgttccg
agtcgcgaagctggtgccaactctatcgcctcattcaatgtgaatcagtcctcatccgta
cttggtgcaacctctcaagtttcagatctgtcatctgatgagcttgacatcagagaacca
tctccaataagtttcagttcaacagcatctgttggtggagcagatgggcaatctagacat
tctttggagactcctctcccctttcccacatattccagcgcatcaactcctcctccagaa
ctcactgcggtggagacaccaaatacttcgaagggtacgctaggaaccacaccgtcttcg
acgcctcctttgccaaccgaacatattggatctacagtacaggagccatctctaactact
ggagaggccttggagaagttcagttcagtggcacaaaagttggatcttgctctctccagg
gcatcttcgtttagcccttcgctcccgcttgatgatgaagttcgggtcccagtaaatgag
gtgcctgaaattattctgcaatgtgtgagtagggacgaggcagccctagcaattgcccaa
aaggttttcaagcgactttacgaaaacaccaccagtcaactacatgttgtagttcacctt
agcatcctggaatccattcgagatgtgtgcaggagagtggtcaaggaattgactagctgg
gttgtgtattccgatgaggatcgcaagttcaatcgggaaattactgttggtcttatcaga
tccgaattaatcaatttgacggactacagcttgcacttgacaaagtggattgatggaggc
cgaaataaggatgccgttgattttgctgcataccttgtgaagacgtgtgtcatagaagaa
gcaggtgttaccagcacagaattttacaacgtgattgacgctcttggcaagcttgcagca
cggccaggctctcccgagtcattgcagcagttggtggaaattgcgaagggtacgccaagt
gcaaacaaagatgagaaaggccggctatccaaagagaaaaagcttccatccagtcgcagt
gcgggactcagagacgatggcaagtccggtatgcgcgaaactgcggatccccctggactt
cgggaacaagcgacacagtttttccaagagtgggcgcgtatttgcacaactcctggagga
cctaacgagaaggctaattcgatttacatatcacagctgcaaagcactggcatgctgaag
ggagacgatgttactgaccgcttcttccgtattctaatagaattggctgagagtcattgc
ttgaactcagagactccacagcctacgactgctgtaggggaatccaggcagcagggaggg
tcgactatgtcgtttgctgccatcgacatggttgcaaaacttgttgtgctgttggtgaag
tactcatctgaaccatctctgaacaaggtcaacctccttacgaaggtcttaaatgtgacg
gttcgtgtgatgaaaagggaccacgatcgaaaagcaggattccacccccgtccatacttc
cgtttgtttgtaacgtggcttttggattttaattcgtcagattccaccttggattctagt
aattttcaggtgctgcaggccttcgcgaatgcgtttctcgccttgcagccgctcgagatt
ccaggcttcagtttcgcgtggctggagctgatcagtcatcggacatttatgccaaagtta
ttattgagcaactcgcaaaaaggatgggctcctttccagaagttattagttgcgctcttc
aaatttatggagccttatcttcggaaagctgatctgagtgaacctgttcgggtgctttac
aagggcacgttgcgtgttcttcttgtgctactccacgacttcccggagtttttatgtgat
catcacttcagcttttgtgacgtcattccaccgtcttgcattcaaatgcgtaacttgatt
ctaagtgcctttcctcgcaacatgcgccttcctgatccgtttactcccaaccttaaggtt
gacttgttgccagaaatatctatgtctccgcgtattctctcagatgtagaaggagctttg
aaagcgaagcagctcaagagcgaggttgatgattttatcaagaatcggaatcaagcaaca
ctcttatctatggatttaaaggggcgattgactttgtcaactcaggaggctcaagcttcc
ggcacacgctacaacgtgcctctccttaacgcgctggtgctttacgttggaatgcaggct
gttcagcaacttcatagcaagacatcgcagcagttggcagcactcacggctcctattact
cacagcgctccaatggacatatttcagcgactcgtgaatgatctcgacacagaaggaaga
tatctctttttgaacgctgtggcaaatcaactgcgctaccccaacaatcatacatattac
ttctcgtgtgtacttctgttcctctttgcggaggcttcacttgaaatcattcaggaacag
attactcgtgtgttgctcgagagactaattgtcaatcggccacacccttggggtctgctt
atcacctttattgagcttatcaagaatccacgctacagcttttggacacacggcttcact
cgatgtgctccagaaattgacaagctatttgagtcagtggcccgttcatgcatgaattct
actttgaagcccagtgatgacgatctgcccggaaaccttccagctgacggtttgaaagga
tga
DBGET
integrated database retrieval system
