Physcomitrium patens (spreading earthmoss): 112282417
Help
Entry
112282417 CDS
T01041
Name
(RefSeq) transcription elongation factor SPT6-like isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppp03021
]
112282417
03036 Chromosome and associated proteins [BR:
ppp03036
]
112282417
Transcription machinery [BR:
ppp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
112282417
Chromosome and associated proteins [BR:
ppp03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
112282417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
Spt6_S1
HTH_44
Tex_central_region
SPT6_acidic
S1_RRP5
HHH_9
SH2
S1
Tex_N
HHH_3
Motif
Other DBs
NCBI-GeneID:
112282417
NCBI-ProteinID:
XP_024375736
UniProt:
A0A7I4DSX5
LinkDB
All DBs
Position
5:complement(17093444..17106126)
Genome browser
AA seq
2158 aa
AA seq
DB search
MRTKASAMAVSEKGRGKGIKIDDSDERRRGVSGKGKKVVLGKGKKVVSDDDDEEDYDSEE
SLADEKEEDEAEHSSGDDIRITRKKMHKRVKEQFELDEDDYDLLEEANVTGFRHPSNLGG
KFKRLKKADHVHGRKDSGAAVEEMSEDEETEEDEDGMVDEENELEDETGVDEDRSFFKYG
HLQKRRARKVQSKSTVFQKGAQWIYKGSRPSVGSRRKRDRNSSAVINEESDDSDENDGND
QETLARKFLEKQFEPSPLEAHNVIARDDRLRSTDIPERIQVLEEVAGPLPRSIVELRRAS
EWIFDRAFGHLCLYSRSEFQHLLNMDKYEVVKQIANVLHLVHNEKLEIPFIAMYRREECL
DLLKELTDEVSHEDRRTIYRFEALWAVHEWNKKWLILQRRKSDLQDSYEMRIPIGIIAIP
EKDNLFKRILRSLADAESEQAVGDCEAQFNLHFPTVEVDMVDRGFKRPKCRSSYSCAHDA
GLGSITKYFGLTSEAFGDNLKAGHKMNEILDEAFLPDDIASKFCNESGPTTQFRDPASIL
RGARHMLAVEISTEPSVRECVRMFYSKNATVNTRPTPAGMEIIDAFHQFEGVKLIKDKQI
SAFDDEQWLLIHKAEAEKLIDVTVGVSKESIDTFLSECEPLFSSDGSTCTSQHWNEQRKQ
ILQEATVTILLSKMEKEARMNLVTNAKRVVVAQCVLQLWNKVSIGPYDPAKGSGRKCRNE
EGSALRVLACCWGPASKGTTFVMLDADGEILNILHTGYLSTKVFTPEQAQRKENDQSRLL
QVLIDFKPHIVVLGAATVQCQYLYRDISDVLFRVVERHAGDLAGRQGTIKLVYGDESIPI
LYETSRISQIQLPGQPGVVRRAVGLGRYLQNPVAMLASLCGPEMDILSVKFHSLQSFLSN
EELYDVIERVMVTVTNQVGLDINRAITHDWLFETLPFVAGLGPRKAGAIKRTIQMKRRVL
FRDDLYLTIQALGEKVFKNSAGFIRVRPIEQTSSEVHHLEPLDNTRIHPEWYQTARNFAE
AVIEKDPKRNDGEIDCDSLNMAVEHVMKNPDLLDTMVLEDFAECVQDDGNSNSIQTLELI
KSELQHGFQECRKVYLEPSKEECFYLMSGEREETLFPGRIVQATIRKVQDNQVMCVLESG
LVGFIYKEDLSDHCDAEPKERITEGSLVTCRVKNVNMEKFLIYLTCKESDFRRDFYGDLH
HDDKPKTTLLSEQEKIRKENEDQHKKTFKLRPIVHPKFQNISADDAIKSLAEKDVGDFTI
RPSCKGPAHLSITLKLSDDLFSHIDIAESDKEHWDLNSFLRLGKTLTIEDESYKDLDEVE
VKYVSKLVTHLHAMLQFRKYKQGTKVEITDALRSEKTEKPKSIPYCFSLSHEYPGAFMLS
YMKATTPFHEYISLFPSGFRFRKKVFDTIDKLVVYFQNHFHDRVPEVSSKMRTWGEEGRG
RGGRRRDDRGRGRNSRGRGREDSHLDNSGELKWRRPLICRRCYEEGHKSMDCPDKDTPCE
KCDSLKHRTVACGVRCGICSFWGHFDKECTNRPTGEPSTNDADGGHASQDDGVPRRTRVG
RASQNDWEGRNWNNGDGNDNLGDDHGTAHETNGGDTWNDRENGRNAAWGIKSDIVSNKEG
ECNAWKNSTIAPGGGGDWDSWNEPPDGVDAAKNAGSRGEDAGWGQKGENASDIDGEINTE
EKVTNPAGRADRETGKGESDNVEGDNIKSARSDGAWDSTTESTGGDDGGVDVPASVGGWD
AVEGGHNDFFGNQSGVPDEDRDVNLGGGGERTRRCMSDLSSSPARRPESIIWKISECTSD
IDFSDNNQRGGKSASDTTTTDCAWGSATDAAGSGIDGGCNTVPESKSGSWDAVQDSEKGR
FGSQNIGAAENWNQTGRDHNVALSEERSTSPRCDSSPAETSHMPVQNTWEDQNGPPASIG
VGCSELVVKERDATVVSGGDSGWTESTQKIASGEDSGWGVLNNEATETAGADWSSVADPW
GSEGFGGLGQKEAAAAESGKICNDEGWNSSQTSDGQGSNIAHGRWANQESRGAQNNGGRW
EGRGGRGPRSDGDGGFKSRRPLICRRCYVEGHKAIECPDKDTPCGKCNRLNHRTIACGVR
CGSCNYWGHFDEECTSRPSRGVSTDSANGGRGFQNDGDAWRSREARVSKTVPRGNSSG
NT seq
6477 nt
NT seq
+upstream
nt +downstream
nt
atgaggaccaaggcatcggcaatggccgtctcggagaaagggagggggaaggggattaaa
attgatgactcggacgagaggagaagaggtgtgtctggaaaagggaaaaaggtcgtgctc
ggtaaaggaaagaaagtcgtgtcagacgatgacgacgaagaggattatgatagcgaggaa
agcttagctgacgagaaagaagaagacgaagctgagcacagtagcggggatgacatcagg
attacgaggaagaaaatgcacaagagagtcaaggagcaatttgagcttgacgaggatgat
tacgatctacttgaagaagcaaacgtgactggctttcgtcatccttcaaacctgggaggt
aaattcaagcggctcaagaaagctgatcatgttcatggtagaaaggattcaggtgcagca
gttgaggagatgtcagaggacgaagaaacagaagaagatgaggatgggatggttgatgaa
gagaatgagttggaagatgaaactggggttgacgaagataggtcatttttcaagtatgga
catttgcaaaagaggagggccagaaaagtccaatcgaagagtacagtattccaaaaagga
gctcagtggatatataaaggttcaagaccatctgtggggagcagaagaaaacgagataga
aattcatcggctgttataaacgaggagagtgacgatagtgacgaaaacgatggtaacgat
caagaaaccttggctcgaaaatttctggagaaacagtttgaaccgagcccgcttgaagct
cataatgtgatagcaagagatgaccggctgcgatcaaccgatatcccagaacgaattcaa
gtgttggaggaagttgcgggtcctttgcctcgatcaattgttgaattgaggcgagcatcc
gaatggattttcgacagagcctttggccatctttgtctgtatagtcgttcggagtttcag
catcttttgaatatggacaagtatgaagttgtgaagcagattgctaatgttctgcatctt
gtccacaacgaaaaattggagattccttttattgcgatgtatcgacgggaggagtgctta
gatcttttgaaagagctgacagacgaggtttcacatgaagatagacgaacgatctatcgg
ttcgaggcgctgtgggcagtgcatgaatggaacaagaagtggttgattcttcaacgcaga
aagtctgacctgcaagatagttatgagatgcggattccaattggcatcattgccattcct
gaaaaagacaatcttttcaagagaattcttagatctcttgcagatgctgaatctgaacaa
gctgtgggtgattgcgaagcccaattcaaccttcactttcctacagttgaagtggatatg
gtagatcgtggatttaaacgacctaagtgtcggtcatcctacagctgcgctcacgatgca
ggtttaggatctataaccaagtactttggattgacctcagaggctttcggggacaatttg
aaagctgggcataagatgaatgagatattggacgaggcttttttaccagatgatatcgct
tccaaattttgcaatgaaagcggaccaacaactcagtttcgggaccctgcatctattctt
cgaggtgccaggcacatgctggctgtggagatcagcacagaaccttcggtacgggagtgt
gttcgcatgttctactcaaaaaacgcaacagttaacacaagaccaactccagcgggaatg
gagataatcgatgctttccaccaattcgaaggtgtgaaattgataaaggacaaacaaatt
agtgcgtttgatgatgagcaatggcttcttatacacaaagctgaagcagagaagcttatt
gatgttacagttggagtatcaaaagagtcaattgatacttttctttctgaatgtgagcct
ctgttttcaagtgatggatcaacctgcacatcccaacattggaatgagcaacggaagcag
attttacaggaagcaactgtgacaattttgctctcaaaaatggagaaggaggcccgcatg
aatctggtcaccaatgctaagcgagtggtggttgcacagtgtgtcttgcagttatggaac
aaagtctctattggcccgtatgatccagctaaaggttctggtaggaaatgcagaaatgaa
gagggttctgcacttcgtgttctggcttgctgttggggcccagctagtaaaggaacgact
tttgtgatgctcgacgctgatggggagatattgaacattttacacactggatatttaagt
accaaagtttttactcctgaacaagctcagcgcaaggaaaatgaccaatcacgcttactg
caagtgctaatagatttcaagcctcatatcgtcgtattgggggctgcaactgttcagtgc
cagtatctctaccgagacatttctgatgtactattcagagttgttgagcggcatgctgga
gatttggctggtagacaaggcacgattaagttggtgtatggagacgaatctattcccatt
ctatatgagacatcaagaatttcccagattcagcttccggggcaaccaggtgttgttaga
cgagcagttgggctgggtcggtatcttcaaaaccctgtggcaatgctagcttcattgtgt
ggcccagaaatggacatcctttcagttaaatttcattcactgcagagttttctcagcaat
gaagaactttatgacgttattgagcgcgtcatggtcacagtaacgaaccaggtcggtctt
gatatcaatcgggcaattacccacgactggttatttgagacccttccgtttgttgccggt
cttggtcctcgtaaagctggagcgattaaaagaactattcaaatgaaaaggcgtgtactt
tttcgagatgatctgtatttaaccatacaggctttgggcgagaaggtcttcaagaattcc
gcaggttttatccgtgtgcgaccgattgaacaaacatcttccgaagtacatcatctggag
cctctagacaatacccgtattcatcctgagtggtatcagacggcgaggaacttcgctgaa
gctgtcattgaaaaggatcccaagcggaatgatggagaaattgattgtgatagtcttaat
atggcagtagagcatgtaatgaagaaccctgaccttttagatacgatggttcttgaagat
tttgctgagtgtgtccaagatgatggaaatagcaatagcatacagacactggagttgatc
aaatctgagcttcagcacgggttccaagaatgccgaaaggtatacttggagccctctaaa
gaagagtgcttctatttgatgagtggtgagagggaagaaactctctttccaggccgaatt
gtgcaagcaacaatcagaaaagtgcaggacaatcaggtcatgtgtgtgttggaatctggg
ttagtgggatttatctacaaggaagacctttcagatcattgcgatgccgagccgaaagag
agaatcaccgaaggcagtttagtgacatgccgcgtgaaaaacgtgaacatggaaaaattc
ttgatctatttgacatgcaaagaaagtgatttccgaagggatttttatggtgatcttcac
catgatgacaagcctaaaaccaccttgcttagtgaacaagaaaagattcgcaaagaaaat
gaagatcagcataagaagacgtttaaactacgcccaattgtccaccctaagtttcagaac
atttctgctgacgatgcaatcaagtcacttgcggagaaagatgtgggcgatttcacaatt
cgtccgagttgcaagggcccagcacacctctcaattacactaaaattatctgatgatctg
ttctcccatatcgatattgctgagagtgataaagagcactgggacctaaatagcttttta
cgccttggaaagactctcactattgaagatgaatcctacaaggatcttgacgaggtggaa
gtcaaatatgtcagtaagttagtgactcatctgcatgcaatgctgcaatttcgtaagtat
aagcaaggaaccaaagtagaaattactgatgctctacgttccgaaaagacggagaagccg
aagtccatcccatactgtttctccctttcacacgagtaccctggagccttcatgctttcc
tacatgaaagctaccactccttttcacgaatacatatctctgttcccaagtggttttcgc
tttcgtaaaaaggtatttgatactatcgacaaacttgttgtttactttcaaaaccacttt
cacgatcgtgtacctgaagtttccagtaaaatgagaacttggggagaggaaggaagaggc
agaggagggaggaggcgtgatgatcgcggtcgcgggcggaatagtcgcggacgtggaagg
gaagactctcatttggacaactctggtgagctcaaatggagacggccacttatatgcagg
agatgttacgaggaggggcataagtcgatggattgccctgacaaagacacgccgtgcgaa
aagtgtgactctctgaagcaccggaccgtagcatgtggggtacgctgtggaatctgcagc
ttttggggacattttgacaaggaatgtacgaatcgtcctacaggagaaccaagcaccaac
gatgcagacggtggccatgcttctcaagatgatggtgttccaaggagaactcgagtaggc
cgtgcttcacagaacgattgggagggcagaaattggaataatggtgacggaaatgataac
ttgggtgacgaccatggtactgcacacgaaactaatggaggagatacctggaacgaccga
gaaaatggacgaaatgctgcttgggggatcaaaagtgatattgtgagcaacaaagaagga
gaatgtaatgcctggaaaaattctactattgcaccaggagggggaggagattgggatagc
tggaacgagccaccagatggagtggatgctgcaaaaaatgcaggaagtaggggagaagat
gctggttgggggcagaaaggtgagaatgcaagcgacatagatggggagattaatacggag
gaaaaagtaacaaatccagcaggcagggcagatagggaaaccgggaaaggagaaagtgac
aatgttgaaggtgataatatcaagtctgctcgtagtgatggtgcttgggattctacaaca
gaatctactggaggagatgatggaggggttgatgtgccagcatctgttggtgggtgggat
gctgtggaaggagggcacaatgactttttcggtaatcaaagcggagttccagacgaagac
cgtgatgttaatttgggaggtggaggagagaggacgagacgctgcatgtccgacctaagt
tcatcacctgcaaggagacctgagtctattatttggaaaattagtgaatgtacatctgat
atagatttctctgataataatcagcgtggaggaaaatctgctagcgacaccaccactacg
gattgtgcttggggtagcgcgacagatgcagcaggtagtgggatagacggcgggtgcaac
accgtacccgaatcaaaatcaggcagttgggatgctgtgcaagatagtgaaaagggaaga
ttcggcagtcagaatataggcgcagctgagaactggaaccaaacaggtcgagaccataat
gtcgcactaagtgaagagagatctaccagtccaagatgtgattcgtcaccagccgaaaca
tcgcacatgcccgttcagaacacttgggaggatcagaatggacctccggcttcaattggt
gttggatgtagtgaattagtagtaaaagagcgtgatgcgacagtggtcagcggaggagat
tctggatggactgagtcaacacagaaaattgctagtggagaagattcggggtggggtgtt
ctaaataacgaagcaactgaaacagctggtgccgattggagttccgttgctgatccttgg
ggttctgaaggatttggtggattaggccagaaagaagcagcagcagcagaaagtggcaaa
atatgcaacgatgaagggtggaattcgtcacaaacaagtgacggacaaggtagtaacatt
gcccatggtagatgggcaaatcaagagagccgtggcgcacagaacaatggcggtcgatgg
gaaggtcgaggaggccgtggtccacgtagcgatggtgatggtgggttcaaatcaagaaga
ccacttatatgcaggagatgttatgtggaggggcataaggcgatcgaatgccctgataag
gacacaccatgcgggaagtgtaaccgtttgaatcaccgcaccatagcatgcggagtacgg
tgtggaagctgtaattattggggacattttgacgaagaatgcacgagtcgaccttcaagg
ggggtaagcaccgatagtgcaaacggcggccgtggctttcagaatgatggtgatgcatgg
cgaagtcgagaagcccgtgtctcaaaaacggttcctagaggcaatagtagtggctga
DBGET
integrated database retrieval system
