Physcomitrium patens (spreading earthmoss): 112282456
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Entry
112282456 CDS
T01041
Name
(RefSeq) uncharacterized protein
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppp03016
]
112282456
Enzymes [BR:
ppp01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
112282456
Transfer RNA biogenesis [BR:
ppp03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
112282456
Prokaryotic type
112282456
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF2344
Rad60-SLD
MamY_C
Motif
Other DBs
NCBI-GeneID:
112282456
NCBI-ProteinID:
XP_024375810
LinkDB
All DBs
Position
5:10117905..10120515
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AA seq
517 aa
AA seq
DB search
MTIKDEDMALVGEKKRPRGEDNDAAAMEVEGNENGAISGEKDNDAGEGVEKVEVKRAKTV
EAALVASPGVVEVEKIAENDSIEMRAEKNGVVKTGTHIPGGGKTGRKRKVALILAYCGAA
YQGMQRNPGAITIEGELEQALFRADAIAECNFGDMRKVDWMRAARTDKGVSAIGQIVSAR
LVIDPPGLVERVNQHLPKDIRVFGYTRVTSNFNAKQMCDKRRYEYLVPVFAFNPHAHHDR
ETMQMWSDRKENVRLQRIEKRKALEQKAAGIEVGAADVKDATNGAPQSKALEAEEVKSVE
VRVEITSVVKEVVEIEAEGTSNGEEQVPFVFDDAKLERLNEILGKYVGTRNYHNFTARIK
PEDPSAKRYIISFTAGKVIEVQGMQFVPCTVVGQSFMLHQIRKMIGTAIAIMRGCVPDSI
IDFALQSKNDVNTPMAPELGLFLDECFYSAYNKKFSNSHEKLSQEGYEEQILKFKHEVIY
PHIATTEAKDGTMALWLHGLNDRHYPYFATHREGAKL
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgacgatcaaggacgaagatatggcgcttgtgggagaaaagaagaggccgagaggagaa
gacaatgatgcggctgcaatggaggttgaggggaatgaaaacggcgccatttctggggag
aaggataatgacgcaggggagggagtggagaaagtagaagtcaagagagcgaagacggta
gaggcagcgcttgttgcaagcccaggggtcgttgaagttgagaaaattgctgaaaatgat
agcattgagatgcgtgctgagaaaaatggagtggtgaagacgggcacgcatattccagga
ggagggaaaacgggcagaaagaggaaagttgcattgatcctagcatattgcggtgcagcg
tatcagggaatgcagaggaatccaggagctatcaccattgaaggtgaactcgagcaagca
ttgtttcgcgctgatgcaatcgctgagtgtaattttggcgacatgagaaaggtggattgg
atgagagctgcacgaactgacaagggagtcagcgccatagggcaaatagtctccgcccgc
ttggtgattgatcccccagggcttgttgagcgcgtcaaccagcaccttcccaaggatatt
cgcgtcttcggctacacgagggtgacatccaacttcaacgccaagcagatgtgtgataag
cggcgttatgagtatctggtacctgttttcgctttcaaccctcatgctcatcatgatcga
gaaactatgcaaatgtggtcggatagaaaagaaaacgtcaggctacagcgcatagaaaag
aggaaagcactggagcagaaagccgcgggaattgaggttggtgctgccgacgtgaaggat
gcaacaaatggagcaccacagtctaaggcattggaagcggaggaggttaaatcggtggaa
gttcgcgtagagattacctcggtcgttaaggaagtagtggagattgaagcggaaggaact
tctaacggtgaagagcaggtgccttttgtatttgatgatgcgaaattggagcggctgaat
gaaatcttgggtaaatacgtcggcacccgtaattaccacaacttcaccgcacggatcaaa
cctgaagacccaagcgcaaagagatatatcatttcgtttacggcggggaaggtcatcgag
gtccaaggcatgcagtttgtgccgtgcaccgtggtaggccagagcttcatgttacatcag
attcggaagatgattggcactgccatcgctattatgcggggttgtgtgcccgactctatc
attgattttgcactgcaaagcaaaaatgacgtcaatacaccgatggctccggagcttggt
ttattcctggatgaatgcttctatagtgcttacaacaaaaaatttagcaattcacatgag
aagctatcacaggaagggtacgaggaacagattttgaagttcaagcatgaggttatttat
cctcacattgcgaccaccgaggccaaggatggcaccatggctttatggcttcatgggctt
aacgatcggcattatccttactttgcgacgcaccgagagggagcaaaactttag
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