Physcomitrium patens (spreading earthmoss): 112282644
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Entry
112282644 CDS
T01041
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112282644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppp03021
]
112282644
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112282644
Transcription machinery [BR:
ppp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112282644
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
112282644
U7-dependent histone pre-mRNA processing factors
112282644
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Alpha_L_fucos
Motif
Other DBs
NCBI-GeneID:
112282644
NCBI-ProteinID:
XP_024376318
UniProt:
A9RRH1
LinkDB
All DBs
Position
5:complement(16760569..16764532)
Genome browser
AA seq
682 aa
AA seq
DB search
MSKRKDPTTVVSREGDKLEVTPLGAGNEVGRSCVYMTYKGKTVMFDCGIHPGYSGMAALP
YFDEIDPISIDVLLVTHFHLDHCASLPYFLEKTNFKGRVFMTHATKAIYKLLLSDFVKIS
KVSVDDMLYDEHDIARTMEKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFMVDIAGMRV
LYTGDYSCEEDRHLRAAEMPHFSPDVCIIESTYGVQIHQPRIMRERRFTDTVAQTVSQGG
KVLIPAFALGRAQELLLILDEYWEAHPELQHIPIYYASPLAKKCMAVYQTYINAMNDRIQ
KQFEVSNPFDFKHIQPLKNIDGFDDIGPAVVMASPGGLQSGLSRQLFDIWCQDKKNSCII
PGYVVEGTLAKAIMNEPKEVTLLSGLVVPLNMRVHYISFSAHADFTQTNAFLHELRPPNI
ILVHGEANEMGRLKAKLITQFAEQNVKILSPKNCQTVEMFFKGEKIAKAVGRLAEKSAKE
GDIVSGLLVRKGFTYQLMAPDDLHSFTQLSTGSVMQRQSVPYKGTFTVLRHRLQQMYEQV
EVVTKADSPTLKVHGNLTVTHEGADYVILQWVSDPISDMVADSVVAMILKLDSQSMFAVG
GGRAKEARLEKEEIKIVHSLLVSLFGDVTLDEEHQSLTVNVDGIEATIDHVKRGIECKDE
NLKDRIKVALRRIQTALYPLDA
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgcaaggatcctactacagtggtgtcacgggaaggggacaagctggaggtc
accccactcggtgctggaaatgaagtcgggcgttcgtgtgtttatatgacctacaagggc
aagactgtgatgtttgactgtggaatccatcctggctactctggcatggcagcgctgccc
tacttcgatgagatagatcctatcagcatagatgttttactcgtgacgcactttcatctc
gatcattgtgcatcacttccttatttcttggagaagacaaattttaaagggagagtattc
atgacacacgccactaaagccatatacaagcttcttctatccgattttgtcaaaatcagt
aaagtgtcagtggatgacatgctgtacgatgaacatgatattgcacggacgatggagaaa
attgaggtgattgattttcatcaaactatggaagtcaatgggattcgattctggtgttat
acagcaggccatgtattgggtgcagccatgttcatggtagacatagctggcatgcgagtg
ctgtataccggggattattcatgtgaggaggatcgccatctccgtgctgctgaaatgcca
cacttttcaccagacgtgtgcattattgaatcaacatacggtgtgcaaattcaccagcca
cgaatcatgcgagaaaggaggttcactgataccgttgctcaaactgttagtcagggcggg
aaggtccttattcctgccttcgccttgggacgagctcaagaactgcttttaattcttgat
gaatattgggaggcgcatcctgagcttcaacacatacctatctattatgcctcccctctt
gcgaagaaatgtatggcagtatatcaaacgtacattaatgctatgaacgatcgtatccag
aagcaatttgaggtctcgaaccccttcgacttcaagcacattcagccgctgaagaacatt
gacggattcgatgacatcggccctgctgttgtgatggcgtctcctggaggtcttcagagc
gggctctcaagacagctttttgacatctggtgccaagacaagaagaattcttgcatcatt
cccggttacgtggttgagggaactctcgcaaaggcaatcatgaatgagcccaaggaggtg
actcttctcagtggtttggtggtgcctctgaacatgcgcgtacattacatatcattttct
gctcacgcagatttcacccagacaaatgcgtttttgcatgagctgagacctccgaacatc
attctagtccacggagaggccaacgaaatgggtcgcctgaaagcgaagctgatcacgcaa
tttgcagagcagaacgtgaaaattctgtcaccaaagaactgtcaaaccgtggagatgttc
tttaagggggagaaaattgccaaggcagtgggccgtcttgcagagaagtcagcaaaagaa
ggcgacattgtgagtgggcttctggtgcggaaaggctttacctatcagctgatggcgcca
gatgacttgcacagcttcacccaactttccacgggcagtgttatgcaacggcaatcggtt
ccttacaagggcactttcaccgtgctccgacaccggctccagcaaatgtatgaacaagtg
gaggttgtaacgaaggcagatagtccaactttgaaagtgcatggaaatctcacggtaact
cacgagggagctgattacgtgattctacagtgggtctcggaccccattagtgatatggta
gccgattccgtggtggcgatgattttgaagttggattcgcagtccatgtttgcagtagga
ggtggacgggctaaagaagcccgattagagaaagaggagattaagatagtccactcgctc
ttagtttcattgtttggagacgtgacactagatgaggagcatcaaagtttaactgtgaat
gttgatggcattgaagcaaccattgatcacgtgaaaagaggcatcgagtgtaaggatgag
aacctcaaagatcgtatcaaggtcgcccttcgcagaatacaaacggctctgtatcctcta
gatgcttaa
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