Physcomitrium patens (spreading earthmoss): 112282899
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Entry
112282899 CDS
T01041
Name
(RefSeq) pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03040
Spliceosome
ppp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112282899
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112282899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppp03041
]
112282899
04121 Ubiquitin system [BR:
ppp04121
]
112282899
03400 DNA repair and recombination proteins [BR:
ppp03400
]
112282899
Enzymes [BR:
ppp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112282899
Spliceosome [BR:
ppp03041
]
Complex B
Other components
Prp19 complex
112282899
Complex C
Prp19-CDC5 complex
112282899
Ubiquitin system [BR:
ppp04121
]
Ubiquitin ligases (E3)
U-box type E3
112282899
DNA repair and recombination proteins [BR:
ppp03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
112282899
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Prp19
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_Gbeta
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
DSE1_N
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
Beta-prop_NOL10_N
ANAPC4_WD40
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_Vps41
NBCH_WD40
Beta-prop_HPS5
PEP5_VPS11_N
CFAP251_N
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_WDR41
ASA1
Beta-prop_VPS8
Beta-prop_Aladin
Beta-prop_DCAF4
RMC1_N
WD40_like
U-box
Beta-prop_ACSF4
Beta-prop_DCAF12
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
112282899
NCBI-ProteinID:
XP_024376807
UniProt:
A9SC45
LinkDB
All DBs
Position
5:7227948..7234561
Genome browser
AA seq
522 aa
AA seq
DB search
MFCSISGVTPEDPVVSRKSGLLFERRLILKHIADNGTDPVTGEVLSAEDLISIKTNKAVK
PRPLQAASIPGMLGLFQNEWDAVVLSNYALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEAREVLLKSERQAPAAGAVPVTAPITSSNGKRAPEADTESEGPGKKPRQGITSDIIK
ELTDCNARLSGQRKKRQISPTLATPDALEKYTQLASHPLHSSSKPGIMSIDIHQTKNLVL
SGGVDGTAIVFNRSSGELVSTLSGHTKRVTSVKFVAKDEYVLTGSIDKTVKIWQGQEDGD
YACKCTLKDHSAEVRAVTVHATQNYFVTASADKTWNFYDLSTGICLTQVNEPSLQDGYTS
ASFHPDGLILGTGTAESLVRIWDVKSQANVAKFEGHTGPVTDISFSENGYFLATAGQDGV
KLWDLRKLKNFRSFAPYDNNTPTNTVEFDYSGSYLAVGGSDIRVYQVASVKQEWNTIKIF
PDLSGTGKVTSIRFGPDASYLAVGSSDRNLRIFGAPEAASEP
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgttttgttccatatcaggtgtgacacctgaagaccctgtggtgtcacgaaaatctggc
ttgctgttcgaacggaggttaatcctcaagcatattgcggataatggaacagatcctgtt
actggagaggtgttgtctgcggaggacctcatttcaatcaaaacaaacaaggctgtgaag
ccaagacctttgcaggcagcaagtataccgggcatgcttggactctttcaaaatgagtgg
gatgcagttgtcttgtccaactatgctctggagcagcagctgcatactgctcgccaagaa
ttgagtcatgctctctatcagcatgatgctgcttgccgagtaattgctcgattgaagaaa
gagagagatgaggccagagaggttcttttgaaatcagagaggcaagcacctgctgctgga
gcggtccctgtgactgctccaataacttccagcaacggaaaaagagctcctgaagcagac
acagagtctgaaggtcctggaaagaaaccacggcagggcatcacatctgacattattaaa
gagctcacagactgcaatgctcgtctctctggtcaacgtaagaagcgtcagatttcacct
actttggctacacctgatgcattagagaagtacacccagttggccagccatcctttgcat
tcaagttcaaaaccaggaattatgtctattgatattcaccaaactaaaaatcttgtgttg
tcaggaggtgttgatggtacagctatagtgtttaaccgaagctctggggaacttgtttct
actctgtctggtcataccaaacgtgttaccagcgtgaagttcgttgcaaaagacgagtat
gttttgaccggctctattgataagacggtcaaaatctggcaaggacaggaagacggagat
tatgcttgcaaatgcacgctgaaagatcattctgcagaggtacgggcagtgactgtacat
gccacccaaaattactttgtcacagcctctgctgacaagacgtggaatttttatgatctc
tctactgggatttgtcttacacaggtaaatgaaccaagtttgcaagatggatacacgtca
gcatcttttcatcctgatggtctcatcctagggactggaaccgccgaatcactggttcgc
atttgggatgtgaagtctcaggccaatgttgccaagtttgaagggcacacaggacccgtg
acggatatatctttctctgaaaatggttactttttggctaccgctggacaagatggcgtt
aagctgtgggacctgcggaagttgaagaacttccgttcttttgccccttatgacaacaat
actcctacaaatactgttgaatttgattacagtggaagctatcttgctgttggcggttca
gacataagggtgtaccaagtagcaagtgttaagcaagagtggaacacgattaaaattttc
cctgatctctctgggacaggtaaagttacatcaatccgatttggaccagatgcctcctat
ttggcagttggcagcagcgatcgcaacctgcgcatttttggtgctcctgaggctgcatct
gaaccttga
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