Physcomitrium patens (spreading earthmoss): 112282936
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Entry
112282936 CDS
T01041
Name
(RefSeq) THO complex subunit 4B
KO
K12881
THO complex subunit 4
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03013
Nucleocytoplasmic transport
ppp03015
mRNA surveillance pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112282936
09122 Translation
03013 Nucleocytoplasmic transport
112282936
03015 mRNA surveillance pathway
112282936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112282936
03041 Spliceosome [BR:
ppp03041
]
112282936
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112282936
TREX complex
112282936
Spliceosome [BR:
ppp03041
]
Complex C
Other components
EJC/TREX
112282936
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112282936
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
YHR127W_C
Motif
Other DBs
NCBI-GeneID:
112282936
NCBI-ProteinID:
XP_024376907
UniProt:
A0A2K1KL96
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All DBs
Position
5:19280847..19284006
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AA seq
284 aa
AA seq
DB search
MTSALDMSLDDLIKTNKSATRGGRGGGGGRGTGSAPQRGRATIAAGTAGGYSGGKISGPA
RREVGRAVARPTPYASAKRVRQAQDSAFQYTNHFIPAVGRGVGGGIETGTKLYISNLDYG
VSNDDIKELFSEIGDLRRCSINYDRSGRSKGTAEVVFMRKPDALNAVKRYNNVQLDGKPM
KIEIIGTNENSVSIPFARSNGAMAVYAGRARAVYPQSLPFARGSGSERGIGAFRGRGGRG
GGRGTVSRGGGRGGGRGGAPAAEKTLEELDKELETYHAEAMQTN
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgacgagcgcattggacatgtcattggacgacctgattaagaccaacaagagtgctacc
cgaggtggtaggggcggtggcggtggtcggggaacaggttctgcgcctcagcgaggaaga
gcgaccattgctgctggtactgccgggggctattctggaggcaaaatttctggtccagcc
cgcagagaagtaggccgggcggtcgcccggccaacgccttacgcgagcgcaaagcgagtc
cgtcaggctcaggattcggcttttcagtacacaaaccactttattccggcagttggcaga
ggagttggtgggggtatcgagacagggaccaagttgtacatttccaatcttgattatgga
gtctcaaacgatgacataaaggaattgttttcagaaatcggtgatttaagaaggtgctct
attaactatgatcgaagtggtcgttctaagggaactgcggaggtcgtattcatgaggaaa
cctgatgctttgaatgcggtcaagagatataataatgtccagttggatgggaagccaatg
aagattgagataattggcacaaatgaaaattctgtctcaattccatttgcacgatccaat
ggagctatggcagtttatgctggtcgtgcgcgcgccgtctatccacaatctttgcccttc
gcacggggttcaggatccgaacgaggtataggcgcatttagaggacgaggcggcaggggt
ggcggtagaggtactgtaagcagaggcggaggccgaggtggaggaagaggtggtgcccct
gctgcagaaaagactctggaagaattggataaagaactagaaacatatcatgcagaagct
atgcaaacaaattaa
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