Physcomitrium patens (spreading earthmoss): 112283117
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Entry
112283117 CDS
T01041
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp04142
Lysosome
ppp04144
Endocytosis
ppp05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112283117
04142 Lysosome
112283117
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
112283117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppp04131
]
112283117
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ppp04147
]
112283117
Membrane trafficking [BR:
ppp04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
112283117
Exosome [BR:
ppp04147
]
Exosomal proteins
Proteins found in most exosomes
112283117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_H_link
Clathrin_propel
Clathrin-link
TPR_Vps41
TPR_COPA_B
Ub-RnfH
Motif
Other DBs
NCBI-GeneID:
112283117
NCBI-ProteinID:
XP_024377223
LinkDB
All DBs
Position
6:5745048..5756016
Genome browser
AA seq
1701 aa
AA seq
DB search
MAANGPITVKEALALTSIGILPQFVTFTHVTMDSDKYICVRETSPQNNVVIIDMASPMQP
LRRPITADSALMNPSSKVLALKAQIPGTTQDHLQIFNIELKSKVKAHMMLEQVVFWKWVT
SSLLGLVTQTAVYHWSIEGESEPQKMFERTASLMSNQIINYRCDASEKWLVLIGIAPGSQ
ERPALVKGNMQLFSVDQQRSQALEAHAAVFASIELPGGDHSSTLISFATKTVVAGQIISK
LHVIELGAQPAESGKPSFTKKQADLFFPPDFADDFPVAMQITSKYNLIFVITKLGLLFVY
DLETATAVYRNRISPDPIFLTAEATEAGGFYAINRRGQVLLATVNEATIVPFVSIQLNNL
ELAVSLAKRGNLPGADNLIVQRFQELFLEHKHTEAAELAAESPQGILRTPETIARFRTVP
IQAGQTSPLLRYFGTLLNKGKLNAFESLELTRLVVSQKKNHLLETWLTEDKLDCSEELGD
LVKSVDKDLALKIYIKARASPKVVVLFAQRQEFEKILIYSNQVGYTPDYLSLLQTITQTD
PQGAVNFAVKMSEMKGGSPVDYNTITDFFLQRNMIREATAFLLDVLKPNLPEHGALQTKA
LEINLVTFPNVADAILTNGIFKHYDRPRIAQLCEKAGVYMRAMQLYTELSDIKRVIINTH
AIESQALMDFFGTLSKDWALECMKELLSANLRANLQIVVQVAKEYAEQLGINACINMFDE
FKSYEGLFLFLNFYVNSSEDPEVHFKYIESAAKTAQFKEVERITRESNFYPAERTKSFLM
EAKLQDARPLINVCDRHDFVPDLIHYLYVNNMLRFIEGYVQKVNPSKAPQVLSQLLDDDC
PEEFIKGLLLSVRSLLSVEALVDECEKRNRLKLLTPLLEHLVSEGSKDVQVHNALGKVTI
DTNNNPEQFLYTNSYYDSRVVGKYCEKRDSSLAVVAYRRGQCDDELVNVTTRNSLFKLQA
RYVVERMDATLWAKILDPENPFRRQLIDQVVSTALPESKSPEQVSVTVKAFMSANLPNEL
IELLEKIVLQNTAFSSNPNLQNLLILTAVKTEKSRVMDYIHRLENFDGPAVGEIAVGAQL
YEEAFMIFKKFNLNVQAVNVLLDNLHSIGRAAEFAERVEVDEVWSQVGKAQLRDGPISDA
IDSFVRAKDASQFTNVIREAGKLKAYDNLVRYLIMVRQKVKEPQVDSALIFAYAKMSRLD
DLTEIVAQPNGCVANLLVVGDRLFNEELYQAAKVVFSHIGNWPRLTSTLVKLYQFQAAIE
VAHKANSSKTWREVCFACVDTEEFRLAQICGLKIIIQVDLLEEVSEYYQNKGNFDELIML
MESGIGLERAHMGIFTELGILYAKYRPEKLMEHLNLFSTRINIPKLLRICDEHHHWKELS
YLYIQYEEYDNAAATIMGHSPDAWDHIQFKDVVSKVANVELYYKAIQFYLQEHPEILNDL
LAVLVTRVDHSRAVDIMRKAGHLPLVKPYMQAVQNCNLSAVNEALNELYIEEEDYEMIRE
SIDTYDNFDPIAMAQRIENHELLEMRRIAAYIYKKAGRWQQSVALSKKDNLFSDAMETTS
QSGDSVFVEELLTFFVKEGKKECFAACLYTCYDLIQADVVIELAWMNNMMDFAYPFLLQY
LREYSLKVAHLMSYKNQDDVHGKLDHNLVADSNMYAQLLPLALPAPPIVAASGTFDAYAG
LPAYGLLQSRVTFYWVQWRVS
NT seq
5106 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaacggtccgattactgtgaaagaggctctggcgcttacaagcatcggaatc
ctcccacagtttgtcacattcacacatgtgactatggattctgacaagtacatctgcgtg
cgcgagacatcgccacaaaacaatgtagtgattatcgacatggcttcgcccatgcagccg
ttacgaagacccataacagcagactcggctcttatgaatccatccagcaaagttctcgcc
ctcaaagctcaaattcctggaacaacacaagaccatttgcagatcttcaatatcgagttg
aagtcgaaagttaaggctcacatgatgctggagcaggttgttttctggaaatgggttaca
tcaagtttgctagggcttgtcacacagacagcggtgtatcactggtcaatagaaggtgag
tctgagcctcagaaaatgttcgagaggacggcgagtctcatgtccaaccagataattaac
taccgatgcgacgcatctgagaagtggctcgtgctcattggcattgcacctggatcacag
gagcgtccggcactggttaagggcaacatgcagctgttctccgtggaccagcagcggagt
caggccctggaagctcatgcagcagtcttcgcgtcgattgagcttccaggtggtgatcat
tcctccactctcatctcattcgcgactaaaacggttgtggcggggcaaatcatctccaag
ctgcatgttattgaactaggagcccaaccagctgaatcaggcaaacctagttttaccaaa
aagcaagcagatcttttcttcccgccggacttcgcagatgatttcccagtggctatgcaa
ataacctccaaatacaacctgatttttgttattaccaagctcgggttactttttgtttac
gacctagagactgcaacagccgtttacagaaaccgaattagccccgatccaatctttttg
acggcagaagctactgaagcaggtgggttttatgcaattaatcgccgtggacaagttttg
cttgccactgtgaatgaagcaacgattgttccgttcgttagcatacagttgaataatctg
gagcttgccgtcagtcttgcgaagcgaggaaatctaccaggggcagataatttgattgta
cagcgatttcaggagttgttcctcgagcataaacacacagaagcagcagagctcgcagca
gagtcgccccaaggcattctccgcactccagaaaccatagccaggtttcggactgtaccc
atacaagcagggcagacctctccattgttgcgatactttggaaccttgttgaacaaagga
aaattaaatgctttcgaatccttggagcttacccgtttggttgtaagccaaaagaagaac
catttgttggaaacatggttaacagaggataaactagattgcagtgaggagctgggagat
cttgtaaagagcgtagataaggatttggcactaaagatctacattaaagctagggcttct
ccaaaagtagtggtactgtttgcccaacgtcaagaatttgaaaagatccttatttattcc
aatcaggttggctacactccagactacttatctttgctgcaaactatcacacaaacagat
cctcagggggcggtgaattttgcagtaaagatgtcagaaatgaaaggtggcagtccagtg
gactataataccattacagattttttcctccagcgtaacatgattagggaggccactgca
ttcctacttgatgttctcaagcccaacttgccggaacatggtgctcttcaaacaaaggct
ctcgaaatcaatcttgtcacttttccaaacgtcgcagatgcgattttgactaatggcatc
ttcaaacattatgaccgtcctcgaattgctcagctttgtgagaaggctggcgtgtatatg
cgtgctatgcagctctatacggagctgagcgacatcaagcgtgtgatcatcaacacccat
gccatcgaatctcaggcattgatggatttctttgggacgctctccaaagattgggcatta
gaatgtatgaaggaacttctttcggctaacttgcgagccaacttgcaaattgtggtccag
gtggccaaggagtatgctgagcaactaggcattaatgcttgtattaacatgtttgatgaa
ttcaagtcctatgagggtttatttctcttcctcaatttctatgtgaactccagtgaggat
ccagaggttcatttcaaatacattgaatctgcagcaaagactgctcagtttaaggaagtt
gaacgcatcacaagggagtccaatttctatccagctgagcgaacaaaatcttttctaatg
gaagctaaactacaggatgctcgccctcttataaatgtctgtgatcgccatgattttgtg
cccgatttaatacattatctgtatgtgaacaatatgctgcggtttatagaaggatatgtt
caaaaggttaatccaagcaaagcaccacaagtcttaagtcaattattggatgatgactgc
ccggaagaatttatcaaaggattgctgctctccgttcggtcactattgtcggtggaggca
cttgtggacgaatgtgagaaaaggaatcgactcaaactgctgacgccgttactggagcac
cttgtaagcgagggaagcaaagacgttcaagttcacaatgccttggggaaggttactatc
gacacaaataacaacccagagcagttcctatatacaaattcatactatgattctcgagtt
gttggcaagtattgtgagaaacgggattcgtcactagcggtagtggcatatcggcggggt
caatgtgatgatgaactagttaacgtgacaacaagaaactcccttttcaagcttcaggct
agatatgtggtggagcgtatggatgcgactttgtgggctaagatattagaccctgagaac
ccattcaggcgtcagttgattgaccaggtggtatctacagcactaccagagagcaagagc
cctgagcaggtctcagttactgtgaaagccttcatgtctgccaacttgccaaacgaactt
attgaactgttggagaagattgtccttcaaaacacagcctttagtagcaaccccaattta
caaaacctcttgattttaactgccgtgaaaactgaaaaatcacgagtgatggattacatc
caccgtttggagaactttgatggtccagctgttggagagattgctgttggagcccagctg
tacgaggaagcgtttatgatcttcaagaaatttaacttgaatgtgcaagctgtcaatgtc
cttctagacaatcttcacagcatagggcgagctgccgagtttgccgaacgtgtggaagta
gacgaggtgtggagccaagttggcaaagcacaactcagagacggtcccataagtgatgca
attgattcctttgttcgcgccaaagatgcttcccagttcactaatgtcataagagaagct
ggaaagctcaaagcttatgataatctagtgcgttatttgattatggtgcgccagaaggtt
aaggagccacaggtagattcggcgctaatctttgcctatgctaaaatgagtcgccttgac
gatcttacagaaattgtcgcacaacccaatggctgtgtagcaaatctactcgtggttggg
gaccgtctctttaatgaagagctttatcaagctgccaaggttgtcttctctcacattggg
aattggcctcgtcttaccagcactctggtgaagttatatcagttccaagctgcaatcgaa
gttgctcataaagcaaatagctctaaaacatggagggaagtttgttttgcttgcgtggat
accgaggaatttcggttggctcaaatttgtggccttaagatcattattcaggtggatctt
ttggaagaggttagcgaatactaccagaataagggcaacttcgatgagctcataatgttg
atggaaagtggaattggtctggaacgggctcacatggggatatttacggagcttggaatt
ttatatgcgaaataccgtccagagaagctcatggaacatctaaatctcttctctacccgc
attaatattcccaagcttcttcgtatctgtgacgagcatcaccactggaaggagctttcc
tacttatacatccaatatgaagagtatgacaatgcagcagcaaccatcatgggtcattct
cccgacgcctgggatcatattcagtttaaggatgtggttagcaaggtggctaacgtagaa
ttgtactacaaagctatccagttctatctgcaagagcatccagaaattctcaacgacctt
ctcgctgttttggtaacccgtgttgatcacagccgtgcagtggatatcatgaggaaggca
ggacatttgcctctggtgaagccgtatatgcaagctgttcaaaattgcaacttgagtgct
gtgaatgaagctctcaatgagctctacatcgaagaagaggactatgaaatgattagagag
tccatcgacacttatgataattttgatccaattgccatggcacagcgtatcgagaatcat
gaacttctggaaatgcgaagaattgctgcttacatatataagaaggctgggaggtggcag
caatcagtagctctttccaaaaaggataaccttttttcggatgccatggagaccacgtca
cagtctggcgacagtgtatttgtagaagagttgctaactttctttgtcaaagagggcaag
aaagagtgttttgccgcatgcctgtacacctgttatgatctcattcaagctgatgtggtg
atagagttggcttggatgaacaatatgatggatttcgcctaccctttcctgctccagtac
ctccgagagtactctttgaaggttgctcatctcatgagctacaagaaccaggatgatgtg
catgggaaactcgaccacaatttggtagcagattcgaatatgtatgcgcagcttttacct
ttggctttgccggccccaccaattgttgcggctagtgggacatttgacgcttatgcaggg
ttgccggcttacggtttgttgcagtctagagtaactttctactgggtgcagtggagagtg
agttga
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integrated database retrieval system
