Physcomitrium patens (spreading earthmoss): 112283231
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Entry
112283231 CDS
T01041
Name
(RefSeq) THO complex subunit 4A
KO
K12881
THO complex subunit 4
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03013
Nucleocytoplasmic transport
ppp03015
mRNA surveillance pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112283231
09122 Translation
03013 Nucleocytoplasmic transport
112283231
03015 mRNA surveillance pathway
112283231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112283231
03041 Spliceosome [BR:
ppp03041
]
112283231
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112283231
TREX complex
112283231
Spliceosome [BR:
ppp03041
]
Complex C
Other components
EJC/TREX
112283231
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112283231
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
YHR127W_C
RRM_10
Motif
Other DBs
NCBI-GeneID:
112283231
NCBI-ProteinID:
XP_024377464
UniProt:
A0A2K1KE31
LinkDB
All DBs
Position
6:complement(1404123..1407252)
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AA seq
277 aa
AA seq
DB search
MTSALDMSLDDLIKTNKSSTRGRRGGGRGAGSASRRGGATAAAGAAVGYPGGKTSGPARR
QVGRAVARPTPYASAKLMRRVPDYAFQYADNFLPAGGRGMGKGIETGTKLYISNLDYGVS
NDDIKELFSEVGDLKRCSINYDRSGRSKGTAEVVFIRKPDALSAMKRYNNVQLDGKPMKI
EIIGTNLRPARFNGGLTVFAGRGRAVASPFVPFVRGPGSFRGRGAFRGRGVGRGAGRGVG
RSGGRGGGRSGAPAVEKSVEDLDKELEAYHTEAMQTN
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgacgagcgcgttggacatgtcgttggatgacctgattaagaccaacaagagttccacc
cgcggtaggaggggcggtggtcggggcgcaggttctgcgtctcggcgaggaggagctact
gctgccgccggtgctgccgtaggctaccccggaggcaaaacctcagggccagcccgcaga
caagtgggccgggcagtcgcccggccaacgccttacgcgagcgcaaagttaatgcgccgc
gtcccggattatgctttccagtacgcggacaactttctaccggcaggtggtaggggaatg
ggtaaaggaattgagactgggaccaaattgtacatctccaaccttgattatggagtctcg
aacgatgacattaaggaattgttttcggaagttggtgatttgaagagatgctctattaac
tacgatcgaagcggtcgttctaagggaacagcggaggtagtattcataaggaaacccgat
gctctcagtgcaatgaagagatataataatgtccagctggatggaaagccaatgaagatt
gagataattggcacaaatttacgccctgcgcgattcaatggaggcttaacagtatttgct
ggtcgtggacgcgctgttgcttcaccatttgtgcctttcgtgcggggtccaggttcattc
cgaggtagaggcgcattcaggggacgcggtgtaggcagaggtgcaggcagaggtgtaggg
agaagcggaggcagaggcggaggtagaagtggggcccctgctgtagagaagtccgtggaa
gatctggacaaagaattagaagcatatcatacagaagctatgcagaccaattaa
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