Physcomitrium patens (spreading earthmoss): 112283279
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Entry
112283279 CDS
T01041
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112283279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppp03041
]
112283279
03009 Ribosome biogenesis [BR:
ppp03009
]
112283279
Enzymes [BR:
ppp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112283279
Spliceosome [BR:
ppp03041
]
Complex A
U1 snRNP components
U1 related factors
112283279
Complex B
112283279
Ribosome biogenesis [BR:
ppp03009
]
Eukaryotic type
Pre-60S particles
Helicases
112283279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
112283279
NCBI-ProteinID:
XP_024377578
UniProt:
A0A2K1L9L4
LinkDB
All DBs
Position
1:complement(18034414..18040617)
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AA seq
539 aa
AA seq
DB search
MSRFDGRYGDPSSFRDRKSDFGGGGGGYGGGGGYGGGGKGGGGYGGRGGGGRGGYGGSSK
RDLDDIALPAQEFENLIPFEKNFYVEHPAVSALTEEEVAAYRRKREITVEGRTVPKPVRT
FEEASFPDYVLHEVLKAGFTEPTAIQAQGWPMALKGRDLIGLAETGSGKTLAYLLPAIVH
VNAQPYLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKNTCIYGGAPKGPQIRDLQ
KGVEVVIATPGRLIDMLEGRHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQT
LYWSATWPKEVEFLARQFLNDPYKVTIGSSDLKANHAIDQVVEVVSEHEKYPKLIKLLEE
IMDGSRLLVFMETKRGCDQVTRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTA
TDVAARGLDVKDIKCVINYDFPGSCEDYVHRIGRTGRAGAKGAAYTFFTAANAKHAKELV
SILVEAGQPVSSQLQAMVGSSRGGGGGGFHRGRGFGGRGFGVQQSGSNTIPLGGQRWGR
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgagccgatttgatggccgatatggcgatccttcgtcgtttcgcgacaggaagagtgac
tttggaggaggtggaggaggatacggtgggggaggaggttatggcggtggtggcaaaggg
ggcggtggatacggtggacgaggaggaggcgggcgaggaggttatggtgggagcagcaag
cgtgatttggacgacatagcgttgccagcgcaggagttcgaaaacctaattccattcgag
aagaatttctacgtggagcatccggccgtgtctgctttgaccgaggaggaggttgcagct
tacaggcgaaagcgagaaataactgtggaaggtcggaccgttcctaagcccgtccgcacg
ttcgaggaggcgtcatttccagattatgtgctgcatgaggtgctgaaggcagggttcacg
gagccaacagctattcaagcgcaaggctggcccatggctttgaaggggcgcgacttgatc
gggctggcagaaaccgggtccggaaaaacactggcatatctgctgccggctattgtgcat
gtgaatgctcaaccgtatctggctcctggagatgggccgatcgtgctggtgttggcccct
actcgtgagttggcggtgcagattcagcaagagtcgacgaaatttggggcgtcttcgaag
atcaagaacacgtgcatatacggaggtgccccgaaagggccacagatccgcgacctgcag
aaaggggttgaggttgtgattgcaacaccgggtcgtttgattgacatgctggaaggtcga
cacacgaatttgcggagagtgacgtacttggtgttggacgaggccgatcgaatgctggac
atggggtttgaaccgcagattcggaagattgtatcgcagattcgaccagatcgtcagacg
ctgtattggagtgcgacatggccgaaggaagtagagttccttgcgaggcagtttttgaac
gatccgtacaaggtgacgattggttcgtcggatctgaaagccaaccatgcgatagaccaa
gttgtggaggtggtgtcggaacacgaaaagtatcccaagttgatcaagctgttggaagag
ataatggatggaagcaggttgctggtattcatggagacgaaacgcgggtgcgatcaggtg
acgcggcagctgagaatggacggttggcctgcgctgtcgatccatggcgacaagtcccag
gcagagagggactgggttttgtcggagttcaaagctgggaagagtcctatcatgacggcc
actgatgtcgctgcgcgtggtttggatgtgaaggatatcaagtgcgtgatcaactacgac
tttccgggttcgtgtgaagactacgtgcaccggattggtcgcacaggacgtgctggtgcg
aagggagctgcgtacacgttcttcactgcagcgaacgcgaagcacgcgaaggagctggtg
tcaatacttgtggaggcgggtcaaccagtgagttctcagttgcaagcaatggtgggcagc
agtcggggcggaggcggtggaggatttcatcgtggaaggggtttcggtgggcgaggattt
ggcgttcagcagtcaggttccaacactatacccctgggcggtcaaagatggggtcggtaa
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