Physcomitrium patens (spreading earthmoss): 112283483
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Entry
112283483 CDS
T01041
Name
(RefSeq) DNA polymerase delta catalytic subunit isoform X1
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03030
DNA replication
ppp03410
Base excision repair
ppp03420
Nucleotide excision repair
ppp03430
Mismatch repair
ppp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112283483
03410 Base excision repair
112283483
03420 Nucleotide excision repair
112283483
03430 Mismatch repair
112283483
03440 Homologous recombination
112283483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppp03032
]
112283483
03400 DNA repair and recombination proteins [BR:
ppp03400
]
112283483
Enzymes [BR:
ppp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
112283483
DNA replication proteins [BR:
ppp03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
112283483
DNA repair and recombination proteins [BR:
ppp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
112283483
MMR (mismatch excision repair)
DNA polymerase delta complex
112283483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
DNA_pol_B_2
divDNApol
REV3_N
Motif
Other DBs
NCBI-GeneID:
112283483
NCBI-ProteinID:
XP_024377943
LinkDB
All DBs
Position
6:complement(12281926..12292512)
Genome browser
AA seq
1092 aa
AA seq
DB search
MDAKKRIGAHGNFPPSKRLQAKGQEMPPPSTVSPDVMEEEDEDVFLEETLLREEELQESR
AAGAALFTKWRRPAISSLNTQKSSIVFQQLEIDYIIGESHKELCPYRSGPAAVLRMFGVT
QEGNSVCCNVHGFEPYFYISCVDGIGPDDVPKLRSTLETRMREANRNSKSQTFVTKIEVV
QKRSVMYYQVQKARSFLKIFVGLPTMVAGCRGILEKGINIDGIGQRCFLTYESNVLFALR
FMIDCDIAGGNWVELPVGAYQKSSRQLSYCQLELDIHYSKIVSYPAVGQYSKMAPFRILS
FDIECAGRKGHFPEPEHDPVIQIANLVTVQGEQRPMVKNVMTLKSCAPIVGADVMSFDTE
KEVLLAWKEFVKEVDPDIIIGYNICKFDLPYLIERAEKLDVVEFPILGRIRNSRVRMKDA
SFSSRQYGIRESKELTIEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLGEQKEDVHHSII
SDLQNGNSETRRRLAVYCLKDAYLPQRLLDKLMYIYNYVEMARVTGVPISFLLARGQSIK
VLSQLLRKAKQRNFVLPNVKSQGVVSGESFEGATVLDAKAGYYDKPIATLDFASLYPSIM
MAYNLCYCTLVRAEDQHYLRLEPEQVTKTPSGDMFVKPSLEKGILPEILEELLAARKRAK
ADLKLATDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSFGRQMIDHT
KKLVQERFTTANSYSHDAEVIYGDTDSVMVQFGTSDVHEAMELGREAAQQISDTFTQPIK
LEFEKVYWPYLLISKKRYAGLLWTKPEKYDKMDTKGIETVRRDNCLLVKNLVTECLHKIL
IDRDIPGAIQYVKNTISDLLMNRMDLSLLVITKVRITGLTKAGDAYENKAAHVELAERMR
KRDAATAPNVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQLSKPLLR
LFDPILKNASKELLHGSHTRSVSISTPSTGGIMKFAKKRVSCVGCRTPISEENQILCKHC
QGREAELYQKTVSNVRDLEQLFGRLWTECQRCQGSLHQDVLCTSRDCPIFYRRKKAQKDL
GEAELQLEKWDF
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atggatgcaaagaaacggattggtgcccatggaaattttccgccgtctaagcggctacaa
gcaaaggggcaagagatgccaccgccatctacagtgtcacccgatgtgatggaggaagaa
gacgaggacgtgtttttagaagagaccctcttgcgtgaggaagagttgcaggagtccaga
gctgcaggagctgcactctttaccaaatggagacgccccgctatttcgagcttgaacact
caaaagagcagcatagtgttccagcagcttgagattgattacatcatcggggaaagccac
aaagaactctgtccttacagaagtggaccagccgcagtgctccgcatgtttggagtgacg
caagaagggaatagtgtatgttgcaatgtgcatggttttgaaccctatttctacatcagc
tgtgtcgatggcattggaccagatgatgttccaaaacttcgtagtacattggagactcgc
atgcgagaggcaaatagaaatagcaaatcgcagactttcgttaccaagatcgaggttgtg
caaaagcgtagtgtaatgtattaccaagtgcagaaagcgcgatccttcttaaagatcttc
gttggtctgccgactatggtggctggttgtagaggaattcttgaaaaagggatcaatata
gatggcattggtcaacggtgcttcttgacctatgagagcaatgtactatttgcactacgt
ttcatgattgactgcgatattgctggtgggaactgggttgaacttccggttggcgcctat
cagaagagctccaggcaattgtcctattgtcagttggaattagacatacactacagcaag
attgtcagctatccagcagtaggccaatattcaaagatggccccgtttcgaattttaagc
tttgatatcgagtgtgcagggagaaaaggccattttccagaaccagagcatgatcctgtc
attcagatcgccaacttggttacagtacaaggggagcagcgacctatggtgaagaacgtc
atgactctcaagtcgtgcgcacccattgttggtgctgatgttatgtctttcgatacagaa
aaggaggtccttcttgcttggaaggagttcgtcaaagaagtggatccagatattattatt
ggatataatatttgtaaatttgacttaccctatcttattgagagggcagagaagttggac
gtggtggagtttccgatacttggtcgtatcaggaacagtcgagttcgtatgaaggacgca
tccttttcatcaaggcaatacggtatcagagaaagcaaggaattaaccatagagggacgg
gtccaatttgatcttcttcaggccatgcagagggattacaaacttagttcctactctttg
aactcagtttctgctcattttcttggagagcagaaggaggacgtgcatcactccatcata
tccgacctgcagaatggaaattctgaaacacgtcgaaggttggcagtttattgtctaaag
gacgcttatcttcctcagcgattactggacaagcttatgtatatatacaattatgttgag
atggctcgtgttactggtgttcctatctcctttcttcttgctagaggtcagagtatcaag
gttttatcacaactcttgagaaaagctaaacagaggaattttgtgttgcccaatgtcaaa
tcacaaggagtagtatcaggagaaagttttgaaggagccactgtgttggatgccaaagct
gggtattatgacaagccaattgctacgctggatttcgcatcgctgtatccctccattatg
atggcctacaacctttgttactgcactttggtcagggctgaggatcagcactatctgaga
ttagaaccagaacaagtgactaaaactccatctggagatatgtttgtgaaaccctcctta
gaaaagggaatactgcccgagatccttgaagagctactagcagcccgcaagcgtgcaaaa
gctgatttaaagttagcaactgatccgctggagaaagctgtgctagatggacggcagctt
gctcttaagatcagtgcgaactcggtgtatggattcacgggggcaactatagggcagctg
ccatgccttgaaatctcctccagtgtcaccagctttgggcggcagatgatagatcataca
aagaaactggttcaagagagattcactacagcgaacagttatagtcatgatgctgaggtt
atttatggagacacagactcggtcatggtgcagtttggaacttccgatgttcacgaagcc
atggagctgggaagggaggcagcacagcagattagtgatacctttacacagcctatcaag
ttggagtttgagaaggtttattggccatacttgctcatcagtaagaagagatatgcggga
ctcttgtggaccaagccggagaaatatgataaaatggatacaaaagggattgagacagtc
aggagggacaactgtctcctcgtgaagaacttggtcacagagtgtcttcataaaattctc
attgatcgtgacattcctggagcaattcaatatgtcaagaataccatctcagacctactc
atgaatcgaatggatctatctcttctcgtcatcacgaaagtgcggataacaggtttgacg
aaggcaggagatgcttatgaaaataaagctgctcatgtggagctagccgaacgtatgcgc
aagcgggacgccgcaactgctccaaacgttggtgatcgtgtgccttacgttatcatcaag
gcagcgaagggtgcgaaggcatacgagaaatctgaagatcctatatatgtactggagaac
aacattccaatcgatccacagtactacctagaaaatcagctgagcaagcccttgctacgt
ctttttgatcccattcttaagaatgcaagcaaggaattgcttcacggatcgcatacacgg
tcagtctcgatatcgacaccttccactggcggtataatgaagtttgctaagaagcgtgtt
agctgcgttggttgtaggactcctatcagtgaggagaaccaaattctgtgcaaacactgc
cagggacgcgaagctgagttgtaccagaaaacagtttctaacgtgagagatctggaacag
ctgtttggaaggctgtggacagaatgtcaacgttgccaaggctccttgcaccaagatgtt
ttatgcacgagccgagactgtcctattttttacaggcggaaaaaagctcaaaaagacctg
ggtgaggccgaactacaattggagaaatgggacttttga
DBGET
integrated database retrieval system
