Physcomitrium patens (spreading earthmoss): 112283839
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Entry
112283839 CDS
T01041
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112283839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112283839
03016 Transfer RNA biogenesis [BR:
ppp03016
]
112283839
Enzymes [BR:
ppp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
112283839
Messenger RNA biogenesis [BR:
ppp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
112283839
Transfer RNA biogenesis [BR:
ppp03016
]
Prokaryotic type
tRNA degradation factors
112283839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
S1_RRP5
Motif
Other DBs
NCBI-GeneID:
112283839
NCBI-ProteinID:
XP_024378842
UniProt:
A0A2K1KFQ2
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Position
6:10040095..10049051
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AA seq
867 aa
AA seq
DB search
MWGGQGTLQAPHLSAATGLRLSSPASRRVERVHTRVGRVVPGNGHFLVVECKDEGIRATD
AAEGVKGPSTKKRGTFNSASPAQAPASTPTQLLHPVSVTIPVGNREIVVETGLIGRQANG
AVTVTDGETVLYTTVCSSSDPSEPSDFVPLSVQYQERFSAAGRTSGGFVKREGRVRDHEV
LVCRLIDRPIRPMIAHGFHYETQVLVWVLSYDGVHSPDPLAITSAGAALAVSDIPMSKPV
AGVRVGLVNGEFIVNPTVGEMENSTLDLVIAGTADATLMIEGYCDFLTEEELMKAVEVGH
DAVRAICAGLQKLADMVGKEKNFDAIQLPPPLIKDYIEELVGTELEKALQIGVKQKRAAA
IKEIEEKLLGALTEEGVRKQQAVVAAAEANVPEEVQVGTWEEEEDLVEDGLVDESDIHVT
SVPRKLVMELFDPVDVKRVYKEVCSEVLRRLIVKTGVRSDGRAVTDVRPIQSMCSLLPRT
HGSALFTRGETQALVVTTLGGDSMGQRIDNLTSTEDLKRFYLQYSFPPSSVGEVRRLGAP
SRRELGHGTLAERALEPIIPDEESFPYTIRVESTITESNGSSSMASVCGGCLAMLDAGVP
LKSPVAGIAMGLILNTRDCGGDGEPLILSDILGSEDALGDMDFKVAGNESGITAFQMDIK
VEGITIPVMRKALDQAKAGRLHILGEMTKSMPPPAQKVSTHAPLITMFKVDSDKISIVVG
PGGKTIRGIIESSGVEAVDVTDDGSVRIVGRSPQGVEAAKAKIQGLTMVPKVGTIYRNCK
VKGVTTFGCFVEIAPGKEGLCHISELSTKKLARVEDFVNEGDFLDVKLIEINARGQLRLS
HRACSEVISPQGTKSKPELAGVSKENV
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgtggggcggtcagggaacattgcaggctcctcacttgtcagctgccacaggattgcgt
ctctcctctcctgcgtcaaggcgggtcgagcgagtgcacacgcgagtcggacgagtggtg
ccgggcaatggccatttcttagttgttgaatgcaaggatgagggtatcagggcgaccgat
gcagctgagggtgtgaagggtccttcgaccaagaagcgggggacatttaattctgcatct
ccagctcaagctccagcttccactcccactcagcttctccatcccgtttccgtaacaatt
ccagtcggcaaccgggagatagtagtggagactggtctaattggaaggcaagccaatggt
gcagtcacagttactgatggtgaaacggtgctctacacgactgtatgttcgtcgagcgat
ccaagcgaaccatcagatttcgtccccctctctgttcaatatcaggaacgcttctcagca
gctggtcgaaccagtggcggcttcgtgaagagggaaggaagggtccgcgatcatgaggtt
ctggtgtgccgattgatagacaggccaatacgtcctatgatcgcccatggatttcattat
gaaactcaagtgcttgtttgggttctcagctatgatggcgtgcattctcctgaccctttg
gctatcacgtcagctggagcagccttggcggtatcggatattcccatgtcaaagccagta
gctggcgtacgtgtgggtcttgtaaatggtgaatttatagtgaacccaacggttggcgag
atggagaattcaaccctggatctagtgatagcgggaacagccgatgcgacgctcatgatc
gagggttactgtgactttttgactgaagaggagttaatgaaggccgttgaagttggtcat
gatgccgtacgagcaatctgtgctggactgcagaaattagcggatatggttggtaaagaa
aaaaacttcgatgcaatccaattacctccgccgctaatcaaggattatatagaggaactt
gttggaacggaattagagaaagcattgcaaattggtgttaagcagaagcgagctgcagca
atcaaggagatcgaagaaaagttattaggtgcattgactgaggagggggtccgcaaacag
caagctgtcgtagcagcagctgaagccaatgttcctgaagaggtacaggttggcacgtgg
gaggaagaagaggatttggtggaagatggcttagtagacgagagcgatatccatgtgaca
tccgtccctagaaaactagtaatggagcttttcgaccctgttgacgtgaagcgagtttac
aaggaagtttgttctgaagtactgcggaggcttattgtaaagacgggtgtaagaagtgat
ggtcgggcggttactgatgttcgacctattcaaagtatgtgtagtcttcttccacgaact
cacggcagtgccctcttcactcgaggggaaactcaggcattggtagtgacaactttgggt
ggcgacagtatgggacagcgtattgataatcttaccagtacggaagacctcaaacgcttt
tatttacaatattcatttcctccatcttctgtaggagaagtgagaaggcttggtgcaccc
agtaggcgggaacttggacatggaacacttgcagagcgggcattggaacccattattcca
gatgaagaaagtttcccatatactattcgagtagagagtactatcaccgagagcaatggc
tcatctagtatggcttcagtctgtggaggttgcctggctatgctggatgcgggtgttccg
cttaaatcgcctgtagctggaatagccatgggtttgattttgaacactagagactgtgga
ggggatggagagccactcatattgagtgatatactaggatcagaagatgcattaggtgat
atggatttcaaggttgctgggaatgaatctggaatcacggcttttcaaatggatatcaag
gtagagggcattacaattcctgtaatgagaaaggcgttggatcaagccaaggcaggccgc
cttcatattcttggtgaaatgacaaagagcatgcctcctccagctcagaaggtgtcaaca
catgcaccgctaatcacaatgttcaaggtagattctgacaagataagcatagtagttggt
cctggaggaaagacaataagaggcatcattgagtcctccggggttgaggcagtggatgtt
actgatgatggctctgttaggattgtagggcgatctccccagggcgtggaggctgccaag
gccaagattcaaggtttgacaatggtccccaaagtgggtactatatataggaattgtaag
gtgaagggtgttaccacatttggatgttttgtagagatagctccagggaaagagggtctg
tgtcatattagcgaattgagcaccaagaagttggcaagagttgaagattttgtgaatgaa
ggagatttcttagatgttaagctgattgagattaatgcaaggggtcagctacgactgagt
catcgtgcatgctctgaggtcatatctccgcagggcacgaaaagtaaaccagagcttgca
ggtgtgagcaaggaaaatgtctaa
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