Physcomitrium patens (spreading earthmoss): 112283850
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Entry
112283850 CDS
T01041
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03013
Nucleocytoplasmic transport
ppp03015
mRNA surveillance pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112283850
09122 Translation
03013 Nucleocytoplasmic transport
112283850
03015 mRNA surveillance pathway
112283850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112283850
03041 Spliceosome [BR:
ppp03041
]
112283850
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
112283850
Spliceosome [BR:
ppp03041
]
Common components
Common spliceosomal components
Cap binding complex
112283850
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like
MIF4G_like_2
MIF4G
DUF7935
DUF6270
Motif
Other DBs
NCBI-GeneID:
112283850
NCBI-ProteinID:
XP_024378875
UniProt:
A9RK96
LinkDB
All DBs
Position
6:11978957..11982246
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AA seq
881 aa
AA seq
DB search
MSASWHSLLVRIGERCPEYGGLADAEEHVETCFGYLARDLSHNESEILALLMQCVEELPH
KDPLYGALVGLINTEDREFVGKVVNRTHAGVQEALDTDNCNKLRILTRFLTVLMCNSVVS
PTSLIELYESLVSSAATTVDEETGNPAWQARADFYVFCILASLPWGGIELSERVPEELER
VLNGIEAYLNLRKPVVYSALQVFEESEKLVEVGDDTEMKLPESEDYLENLWSSIQALMEN
SWKVDSVPRPHLSFESRFVNSQTHDFDPVLIPDNPKAPENATEITLGRQRQEAERTYPRR
NMRLRIFPSSKTDEKITPIDRFVVEEYLLDVLFYLNGCRKECAAYMVGLPVPFRYEYIMA
ETVFSQLLLLPKPPFRLIYYTVVMVDLCKALPGAFPAVVAGAVRALFKRVAEMDVECRIR
LVQWLSHHLSNFQFVWPWEEWAHILDLPKWAPERVFAKEVLEKEVRLAYWEKVKDSVTST
PRLMELLPPKNTPVYVYAPENRGSVPEAETTLATEFTNLVRGKKTVREIQVWIDERILPT
QGQQASIQIVAQTLLYIGSKSFTHTVTVLEKYGQIFRKIAPDQTSQILMIDTVSQLWRNS
AQMTAIVIDRMMGYRMVSNLSIVAWVFSPQNVQQFHTSDQVWEIIRNAINKTNNRTVDLR
KEIAAAEKALKLATAGTAKAYTKWEAAVAALKAAEAKSEDNRNALSAKVDWAKTVADKAQ
DEETSAQDSLESKEALLARALREQEALFMAVYQSFADLLTDRLSKSVPESHGAPNPMEDT
KGEDADAQAPVAMEPDEENIEEDGTKQKNQEDVINGTTTLFADAQEEEQWRKCTLGYLRA
ISRQYCDEVWLLMEKLDSTVFTDKVHPLVLSTTYAGLQRSS
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcgagttggcattcgcttctggtgcgaattggagaacggtgtccagagtatgga
gggctggcggatgccgaggagcatgtggaaacctgctttgggtatctcgcgagggacttg
tcgcacaacgagagtgagatcctggctctgctgatgcaatgtgtggaggagctgccccac
aaagatcccttgtatggcgccctggtggggcttatcaataccgaggatagagagtttgtg
ggtaaagtcgttaatcggacgcacgcaggggtccaggaagcgctggacacagacaattgt
aacaagctccggattctcaccaggtttttgacggtactgatgtgcaatagcgtggtgtcg
cccacgtcgctcattgagctgtatgaatcgttggtgtcctcagccgcaactacggtagat
gaggagaccggtaaccccgcatggcaggcgcgtgctgatttttacgtcttttgtatcctt
gcgtctctgccatggggtggtattgagctttcagagcgtgtcccagaggagctagagcgt
gtcctcaacgggatcgaggcttacttgaatttgcggaaaccggtggtgtatagcgccctc
caagtgttcgaggaaagcgagaagctcgtagaagttggggacgacacagagatgaagctc
cctgagtcagaggactatctggagaatctctggtccagcatccaggcgctaatggaaaat
tcatggaaagtggacagcgtgccgcggccgcacctctcatttgagtcacgctttgtgaac
tcgcagactcatgattttgatccagtcctaattccagataatcctaaagctccagagaat
gctaccgagattacattgggccgtcaacgccaagaggcggagcgcacatatcctcgaaga
aacatgcgcctgcgcatttttccctcctcaaaaacagatgagaagatcacaccgattgat
aggtttgtggtagaggagtacctgcttgatgtactgttctatctcaatggatgccgaaag
gagtgtgctgcgtacatggttggccttccagtgccgtttcgatatgaatatatcatggca
gagacagtcttctcgcagcttctgttgcttccaaagccaccattccgtctcatttattac
acagtagtgatggtggacctgtgtaaggcgcttccaggcgcttttcctgctgtagtggct
ggtgcagttcgtgctctcttcaagagggtcgcagagatggatgtggagtgtcgcattcgc
ttagtgcagtggctatctcatcatctctccaacttccagtttgtgtggccgtgggaagaa
tgggcacacattctagaccttcccaaatgggcgccagagcgggtctttgcgaaggaggtg
ctggagaaggaggtcaggttggcgtattgggaaaaagtaaaagacagtgttacatcgacg
ccaaggctcatggagcttcttcctccaaaaaacacgcctgtatatgtgtatgcacctgag
aacagaggatcggttcctgaagcagaaactactctcgccactgaattcacgaatcttgtg
agaggcaagaaaactgttcgtgaaattcaagtatggattgatgagcgcatcttaccgaca
caagggcagcaagcctcaatccaaattgtggcgcaaacgttgctgtacattgggtcaaaa
agtttcacccacactgttactgtccttgagaagtatggtcaaatttttaggaagatagca
cccgaccagacctctcagattttaatgattgacaccgtttcgcagctgtggcggaactca
gctcagatgacagccattgtcatcgaccgcatgatggggtatcgcatggtctcgaactta
tccattgtggcctgggtatttagtcctcaaaacgtgcagcagtttcacacttccgatcag
gtttgggaaattattcggaatgcaatcaataagaccaacaatcgtacagtcgatttgcgg
aaggaaattgcagccgccgagaaggccctgaagctggcaactgcaggtacagccaaagct
tataccaagtgggaggcagctgtggcagctctcaaggcagctgaagccaaaagtgaagat
aatcgtaatgcgttgagtgccaaggttgactgggctaaaactgtagctgacaaagcccaa
gacgaagaaacttccgcacaggactctctggaatccaaagaggctctgcttgcacgggca
ctacgagagcaggaggctttgtttatggccgtctatcaaagctttgcagatttactaacc
gaccgcctctcaaaatcggttcccgagtctcatggagcgccgaatccaatggaagatacg
aaaggggaagatgcagatgctcaagcaccagttgccatggaacctgatgaagaaaatatc
gaggaagacggtactaagcagaaaaatcaagaagacgtaatcaatggtactacaacctta
tttgctgatgcacaggaggaagagcaatggcgcaagtgtaccctaggctatctacgcgcc
atttcaagacagtactgtgacgaggtatggttgctgatggagaagcttgactctactgtc
ttcactgacaaggttcaccctctggtgttgtcgacaacttacgctggacttcaacggtca
tcatga
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