KEGG   Physcomitrium patens (spreading earthmoss): 112284074
Entry
112284074         CDS       T01041                                 
Name
(RefSeq) DNA-directed RNA polymerases II and IV subunit 5A
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
ppp  Physcomitrium patens (spreading earthmoss)
Pathway
ppp03020  RNA polymerase
ppp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ppp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    112284074
  09124 Replication and repair
   03420 Nucleotide excision repair
    112284074
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppp03021]
    112284074
   03400 DNA repair and recombination proteins [BR:ppp03400]
    112284074
Transcription machinery [BR:ppp03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     112284074
  RNA polymerase III system
   RNA polymerase III
     112284074
  RNA polymerase I system
   RNA polymerase I
     112284074
DNA repair and recombination proteins [BR:ppp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      112284074
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N NA-iREase1 Mrr_cat LH_prot_PucE DUF1216
Other DBs
NCBI-GeneID: 112284074
NCBI-ProteinID: XP_024379360
UniProt: A0A2K1KGF3
LinkDB
Position
6:12694178..12695717
AA seq 244 aa
MLYVPLPWLLLLVVLVVVYLGFISFCCCERFEEGFMMSGQSLDEQCARLYRIRKTVMEML
RDRDYVVAEFELNSTKEEFREKYGDEPKREDLVIQKPKRSNNAEHIFVFFPEEAKVGVKT
IKTYVDRMKTENVHRAILVVQQNLTPFARQCVSEMSSKYHVEVFQEAELLVNIKDHVLVP
QHEVLNAEEKITLLQRYTVKETQLPRMQENDPVARYYGLKRGQVVKIIRPSETAGRYVTY
RFVV
NT seq 735 nt   +upstreamnt  +downstreamnt
atgctgtacgtacctttgccttggttgctcctcctggttgtattggtggtagtctattta
gggtttatcagcttttgttgttgtgagaggtttgaagaagggttcatgatgtcgggtcag
tcactcgacgagcagtgcgcgcggttatatcgaattcgaaagactgtcatggagatgctt
cgtgatcgggactatgttgtggccgagtttgagcttaattcaactaaggaggagttccga
gagaagtatggggatgagccaaagcgagaggacttggttatccagaagcccaagcgttct
aataatgctgaacatatatttgtattttttccggaagaagcgaaggttggagtgaagacc
attaagacttatgtggaccgcatgaagacggagaatgtgcatagggctattcttgttgtg
cagcagaacctcactccctttgcaagacaatgcgtgagcgaaatgtctagcaagtaccat
gtggaagtttttcaggaagcagagttgctggtgaacatcaaggaccatgttcttgttcct
caacacgaggtgttgaatgccgaagagaagatcactttgctgcagcgttataccgtgaag
gagactcagctccctcggatgcaagagaatgatcctgtagcgcggtactatggtctaaag
cggggacaagtggtgaagatcatacgaccaagtgagactgcgggtcgatacgtcacttat
cggtttgtcgtgtga

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