Physcomitrium patens (spreading earthmoss): 112284780
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Entry
112284780 CDS
T01041
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03013
Nucleocytoplasmic transport
ppp03015
mRNA surveillance pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112284780
09122 Translation
03013 Nucleocytoplasmic transport
112284780
03015 mRNA surveillance pathway
112284780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112284780
03041 Spliceosome [BR:
ppp03041
]
112284780
Enzymes [BR:
ppp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112284780
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112284780
Spliceosome [BR:
ppp03041
]
Complex C
Other components
EJC/TREX
112284780
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112284780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
112284780
NCBI-ProteinID:
XP_024380774
LinkDB
All DBs
Position
7:3709963..3714459
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AA seq
425 aa
AA seq
DB search
MGEPYPETEELLDYEEEEEAAPDAVAAKTNGETVKKGYVGIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVLCH
TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKDLLKNECPHIVVGTPGRILGLAR
DKDLSLKSVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKR
FMQDPMEIYVDDEAKLTLHGLVQHYIKLSEVEKNRKLNDLLDALDFNQVVIFVKSVSRAA
ELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVIN
YDMPDSADTYLHRVGRAGRFGTKGLAITFVASAPDSNVLNQVQERFEVDIKELPEQIDTT
TYMPS
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagccataccccgaaaccgaggagttgctcgactatgaggaggaggaagaggcg
gcgcccgacgccgttgcggcgaaaaccaacggcgagactgtcaagaagggttacgttggg
attcatagctccggatttagggactttcttttgaaacctgagcttctccgggccatcgtt
gattgtgggtttgagcatccgtctgaagttcaacatgagtgcataccacaggccattctc
gggatggatgtgatatgtcaagccaagtcaggaatggggaaaaccgctgtctttgtgctt
tcgactctacagcagattgagcccgttgcgggtcaggtcgctgcactagtactgtgtcac
actcgtgaactggcctatcagatctgccatgagttcgaaaggtttagcacttatctcccc
gatattaaggtggcggttttctacggtggtgttaacatcaaaacgcacaaagatcttcta
aaaaacgaatgccctcacattgtcgttggtacacccggtcgaattctgggtttggcccga
gataaggatttaagcctgaaaagcgtgaggcacttcattcttgacgagtgtgacaaaatg
ctggagtcgcttgatatgcgaagggacgtacaggaaatttttaagttaacccctcacgac
aagcaagtaatgatgttttctgccacattgagcaaagagattcgaccagtctgcaagcga
ttcatgcaagatcccatggagatttatgtggacgatgaagcaaaactcacccttcacgga
ctcgtccagcattatatcaagttaagcgaggtggagaagaatcgcaaactcaacgacttg
ctggacgctttggatttcaaccaggtggtgattttcgtcaagagtgtcagccgtgctgct
gagttaaataagctgttggtggagtgcaactttccttccatttgtatccactcggggatg
tctcaagaggagcgattgacacggtacaaaggtttcaaggaagggcataagcgtatacta
gttgctactgatcttgttggccgaggcattgatatcgagcgtgtcaatattgttatcaac
tatgacatgccagactctgcggacacctacttgcacagggttggtagagctggtagattc
ggaacgaagggtctagccattacttttgtggcctcggctcctgattcaaatgtcctaaat
caggttcaagagcgatttgaagtggacatcaaggagctccctgagcaaatcgatacaacc
acttacatgccatcatga
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