Physcomitrium patens (spreading earthmoss): 112285643
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Entry
112285643 CDS
T01041
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112285643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112285643
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112285643
mRNA degradation factors
5'-3' decay
Decapping complex
112285643
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Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
112285643
NCBI-ProteinID:
XP_024382379
UniProt:
A0A2K1K875
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Position
8:complement(14074874..14079299)
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AA seq
851 aa
AA seq
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MQKSAEKSLRMEETEEKPSNNARPSSRSSRDEFFDASQYAFFGGNVSEEVELGGLDEEDT
GEQLEDGEDALDNLVERDEMSAADATPEWDNVSDLALSFAKLNSVSPRREEVPRSGLDEG
RQFLLNRDAAVPRERSFEGAPAHNWLDRPTLDAEVETGARKLWPNHQHQFVQGLDFDGMP
LGTPHQQPVQAQSRQQQHHQQQWWNGDPNLPHMSPPNALAGAYPPSRPHQRVATPPGHQS
GQYRQPMAAPHSLPHHGAGVISSHVVYGPGQSPFTSSGHISPPAQSPSGPWAQHPTGSAV
SGNSVPQQMPLMPPQVMLQYNRQQAPLHSSPPPPYGQVPYGSSPSPGPDRLMQKINETGM
PRAFWDPREQRFDPQFRPRQNHQRFHSQNLPSDGGHGGRGGPTGIYQFRSKYMTAEEIEN
IVRIQWAATHGSDPYIDDYYHQAVQSKLAGGTPHGRRHFAPAHPREMPSHARAAAEPHAY
LQVDALGRVPYSSIRRPRPLLEVDPAPADGMSMSDHINGNIGVDGMPSQRPLEQEPMLAA
RIAIEDGLCLLLDVDDIDRLLAVQQHPDGGAQLRRRRQILLEGLASSLQLADPLGNTSDL
GNRILNGQFVGLNPKDDLVFLRLVSLPKGKKLLTRYLQLLSPGSELGQIVCMAVCRHLRF
LFNGPQSDAGAAATTSALANAVALAVLNMDLPSLSACLLSVVLASEAAPLRPMGAPAGDG
ATVILRSLLEKASMARRDRHVFQTPQSVTIWQHAFDAFFTLLTKYCTNKYDSVVHSLMML
YPGNIPAINAAADEALKKEIPVELLQATLPHTSEQQRKLLYDLITNRTGAMSGTSNQAAD
NHASSTATVRG
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagtctgctgaaaagagtcttaggatggaagaaacagaggaaaagcctagtaac
aacgcgcggccttcctctcggtcaagtcgggacgaattctttgatgcttcccagtacgcg
ttctttggaggaaatgtatcagaagaagtggaactaggaggtttggatgaagaagacacc
ggtgagcaacttgaagatggagaagatgctcttgataaccttgtcgagagggatgagatg
tcagcagcagatgccactcctgaatgggacaatgtgtcagatcttgctttatccttcgca
aagcttaatagtgtatctcctcgaagagaagaggtgccgcgaagcggattggacgaagga
aggcagtttttgttgaacagagatgctgcagttccacgtgaaagatcgttcgagggggct
cctgcacacaattggctggaccgaccgacattggatgcggaagtggagactggtgcaagg
aaattgtggcctaaccatcagcaccagtttgttcaggggttggatttcgatggcatgccc
ttaggaactcctcatcaacagccagtgcaagctcaatctcggcagcagcagcatcatcag
caacaatggtggaatggtgatcctaatctccctcacatgtcacctccaaacgcacttgca
ggggcttatcctccttccaggccacatcagcgggttgcaactccacctggtcatcaatct
ggacaatacagacagcctatggctgcccctcatagtttacctcaccatggtgcgggcgtc
atttcttctcacgtagtatatggccctgggcagtcaccctttacttcatcggggcatatt
tcacctcctgcgcaatccccatctggaccttgggcacaacacccaactggatcggcagtt
tctggaaattctgtacctcagcaaatgccacttatgcccccacaggtgatgttacagtac
aatagacaacaggcccctctgcattctagtccgcccccaccttacgggcaggttccatat
ggtagttccccatcacctggaccagatcgtcttatgcagaagataaacgaaaccggaatg
ccccgggcgttttgggacccaagagaacaacgctttgacccacagtttcgtcctaggcag
aatcatcagcgttttcattcgcagaatcttccatccgatggcggccatggaggtagggga
ggtccgactggaatttatcaattccggtcaaaatacatgaccgcggaagagattgagaat
atagtacgaattcagtgggctgccacacatggaagtgacccttatatcgatgactactat
caccaagcagtgcaatcgaaactagcaggaggcactccccatggacgtcgccactttgcc
cctgcacatcctcgtgaaatgccatctcatgctagggcagcagctgagcctcatgcatac
cttcaagtggatgccttgggcagagtaccgtactcttcgattcgcagaccacgaccactc
ctggaggttgatccagcccctgccgatgggatgagtatgagtgatcatatcaatggaaac
ataggcgttgatgggatgccgtcacaaaggcctttagaacaagagcctatgctagcagcc
cgaattgccatagaggatggcctctgccttctacttgatgtcgatgatatagaccgttta
ctggctgtccagcaacaccctgatggaggtgcccaactccgcagacgtcgccaaattctg
ctcgagggtttggcatcatctctgcaattagccgaccctctgggtaatacctctgatttg
ggaaatcgtatccttaatggacaatttgtggggctcaaccccaaggatgacctcgtcttt
ttgcgattagtgtcacttcccaaaggaaagaagcttctgactaggtacctgcagttgctg
agccctgggagtgaacttggacagatagtatgtatggccgtttgtcgacacttacgattt
ttgttcaacggtcctcagtccgatgccggtgcagcggctaccacatctgcattggctaat
gcagtcgccttggctgtattgaatatggacctcccgtccttgagcgcttgtttactttca
gtcgtactggcaagtgaggctgcacctcttcgtccaatgggcgcaccagcaggtgatgga
gccaccgttattcttagatccttgttagaaaaggcaagcatggcaagaagagatagacat
gtcttccaaacaccacagagcgttactatatggcagcatgcatttgacgcattttttacg
ttactgacaaaatactgcaccaataagtatgacagcgtggtgcactctttgatgatgttg
tatcctggaaacataccggctattaacgctgctgcggatgaagctctgaagaaagaaatt
cccgttgagttacttcaagcaactcttcctcatactagtgaacagcagagaaagctactg
tatgaccttatcaccaaccggactggcgctatgagtggaacttctaatcaggcggctgac
aatcatgcgagctccactgctactgtacgtggctga
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