Physcomitrium patens (spreading earthmoss): 112285835
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Entry
112285835 CDS
T01041
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 2
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112285835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112285835
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
112285835
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Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
UNC80_C
Motif
Other DBs
NCBI-GeneID:
112285835
NCBI-ProteinID:
XP_024382860
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Position
8:complement(1969697..1972504)
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AA seq
238 aa
AA seq
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MSAGFGVTRLIASLQLRSCLSVCLSALLLSWGFEAEANMVSGPVVNVYPLSSYTFGSKEA
KMEKDTSVADRLARMKQNYMKEGMRTSVEGILLVQEHNHPHVLLLQIGNTFFKLPGGRLK
TGENEIEGLKRKLTSKLAPTASSIQPEWQIGECAAMWWRPNFETLLYPYQPPHITKPKEC
KKLFVVCLSERQYFAVPKNLKLLAVPLFELYDNVQRYGPVISAIPQQLSRFNFNAINN
NT seq
717 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctggatttggtgttaccaggctcatagcctctctacagcttcggagttgcctg
tctgtctgtctgtctgcactactgttgagttggggtttcgaagctgaggccaacatggtg
tctgggcccgtggtaaatgtgtatccgctgtcgagttatacgtttggcagcaaggaagcc
aagatggagaaggacacctctgtcgccgatcgtcttgctcgcatgaaacagaattacatg
aaggaaggtatgcggacaagtgtggaggggattttgctggttcaagagcacaatcatcct
catgtcttattgttgcaaattggtaacactttcttcaagcttcctggtgggcgcctaaag
actggggaaaatgaaattgagggtctcaaacggaagcttacaagcaagcttgctccaaca
gcctcttctatacaaccagagtggcagataggagaatgtgccgctatgtggtggcgccca
aattttgagactttgctatacccttatcaacctccccatatcaccaaacccaaggaatgc
aaaaagttgtttgtagtctgcctatccgagagacagtatttcgctgttcccaagaacttg
aaacttctagcagttcctttgtttgagctctacgacaacgttcagagatacggtcctgtg
atttctgctattcctcagcagttatccaggtttaacttcaacgccatcaacaactga
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