Physcomitrium patens (spreading earthmoss): 112285837
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Entry
112285837 CDS
T01041
Name
(RefSeq) uncharacterized protein isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112285837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112285837
03012 Translation factors [BR:
ppp03012
]
112285837
Enzymes [BR:
ppp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112285837
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112285837
Translation factors [BR:
ppp03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
112285837
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
dsrm
HA2_C
Helicase_C
DEAD
HA2_N
Dicer_dimer
AAA_19
AAA_22
nSTAND3
ATPase
AAA_16
AAA_25
Motif
Other DBs
NCBI-GeneID:
112285837
NCBI-ProteinID:
XP_024382864
UniProt:
A0A7I4EKC9
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All DBs
Position
8:complement(11678699..11685941)
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AA seq
1119 aa
AA seq
DB search
MNRGVLGTGPDGNKRKRPDAQAAYITSMMHGNPKLLLSESPLFAGLTQHQLPFTVYPIKV
SPDVQYQARIRLVFPDGRESFGIGVARTKKESERVAAIDACQQLQDRGLLVGVKKSSTAS
DGWGDNPKNTLVTSVAFRDVCCGGNARALPITLRSSGPDHAKTFVAELTVPLRNKGEVFV
AVGQGPNKAEAERACCTAACAKLYDVGLLQKPNDKGYSPPFTAVPASNKAAHNQQQNEMP
AIVSLRIEELSMMEDALQRLHFENVRLEKQEPEASVSLQPRSFAHKSNDIPIPKEQLGTE
NAILRLEARKRSVSPEFAEQRRVRQSLPAWRERQKIVGFVSNHRVVVLTGETGCGKTTQV
PQYVLEDAELQGSGAEVHIVVTQPRRIAAISVAERVAWERGETLGKSVGYAIRLESSPPR
PRGSILYCTTGILLHRLQRADGLVGVSHVIIDEVHERDVDTDFLLVVIRELLNHSPTLRV
VVMSATLDASIFTRYFGGCPLVNIPGMTHPVRVYNLDDLPQLMGRFHLPALRQAHGGSLD
EEDVDIDLTVSVIVWISQVFAQGDGAILCFLPGWDTITIVRDRLLKVRASRFMMIVPLHS
QLPAGEQRAAFARAPFGMRKVVLATNIAETSVTIDDVVYVVDSGKIKEKQYDVSRNLTTM
RVQWTSQASARQRQGRAGRVQPGFCFQLFTQTTFLNMLEHQIPEMQRVPLEELCLQIKAV
LSPNTVVEKFEATGVNFSQELEETRAETTRIATFLSKAIQPPTASSVYAAIQVLKQLGAV
DEFENLTPLGRILAKLTVHPRFGKMLVYGALLGCLDPLLTVAAAACFRDPFVSPLNRREE
ADQVRASFGTGVAYGSDQLALVNAFQQWKAADFNNHGYSFCEDNFLAFMTMTLIAGMRTQ
FERTLLESGLCEPYVQSPNPVVSAHLARSLLVAGLYPNIVRSELCRESKGMKNATKHAYR
WRLGFCGVNGRVFLHPTSVLSEKHLNSSLSYYLVFQEKLQTSQVFIRGCTLLPPLAVVLL
GWNVTFIKDVSSGSAPSPNGDWMLLRVEGWLNFFIDRRAGLLLLQLRDAFDVVLARWVSG
HARTDSERQVVECVVTLLESTCYEMLETTSNRKAPIVSR
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgaaccggggggtcttgggaacagggcccgatggcaacaaaagaaaacggcccgacgca
caggcagcctacatcaccagcatgatgcatggcaacccgaagcttctgctctcagaatcc
cctctatttgcgggcctcacacagcaccaactaccgtttacagtctacccaattaaagta
tctcccgatgttcaatatcaagcccgcatccgtcttgtatttccggatggcagggaatca
tttgggattggagttgctcgaaccaagaaagagtcagaaagagttgctgcgatcgatgct
tgccagcagttacaagatagaggtcttcttgtaggggtgaagaagagcagtacagcaagt
gatggatggggtgacaatcccaagaatactctagtaactagcgtagccttccgggatgtt
tgctgtgggggaaacgcccgagctttgccgattaccctccgctcctctggtcctgaccat
gctaaaacttttgtggcagagttgacagtgccattgaggaacaaaggggaagtttttgta
gcggtgggtcaaggccctaacaaagctgaagcggagcgcgcgtgctgtactgcagcttgt
gcgaaactttatgatgttggattgcttcagaagcctaatgacaaagggtatagtccgcca
tttaccgccgtccctgcttccaacaaagctgcgcataatcaacagcaaaatgagatgcct
gctattgtgagcttacgaattgaggagctgtcaatgatggaagatgcattgcagagactt
cactttgagaatgttagactcgaaaagcaggagccagaagcttcagtgagtttgcagccg
cgatcctttgcacataaatcgaacgacataccgataccgaaggagcagttaggcactgag
aatgcaattctgaggctagaagcacgtaagagatcagtttcaccggagttcgctgagcaa
aggagagtccgtcaatccttacctgcatggagggagaggcaaaagattgttggttttgta
tcaaatcaccgcgttgtggtcctgactggagagacaggttgtgggaaaaccacccaggta
ccacaatatgtgttggaagatgcagagcttcaaggatcaggtgcagaggtgcatattgtt
gttacacagcctcgcaggattgcagccataagtgttgcagagcgtgtggcctgggagcgt
ggagagactttggggaaaagtgtgggttatgctatccgccttgaaagctcaccaccaagg
cctcgaggaagcatcctttattgcacaacagggatcttattgcatcggttacagagagcg
gatggtttggtgggggtgagccatgttattatcgacgaagtgcatgaacgagatgtggat
actgattttttgcttgttgtaattcgcgagcttttgaatcatagcccgaccctgcgggtg
gtagtcatgagtgctactctggatgcatctatattcacaaggtactttgggggttgtcct
ctagtgaacataccaggaatgacgcatcctgtgagggtgtataacctggacgatcttcct
cagctaatgggtcgatttcatctgccagctttgaggcaagctcatggaggcagcttggat
gaggaggatgtggatatagacttgactgtatctgtaattgtgtggatatcgcaagtcttt
gcacaaggtgacggggccattctctgctttttacctggctgggataccatcaccatcgtc
cgagatcgtttactcaaagtgcgtgccagtcgtttcatgatgattgtcccactacattca
caactacctgcgggtgagcaacgagcagcatttgctcgtgcaccattcggcatgaggaag
gttgttctggccaccaatatagcagagacaagtgttaccattgacgatgtagtatatgtg
gtggattctggcaaaatcaaagagaagcaatatgacgtttctcgcaatttaaccaccatg
cgcgttcagtggacatcccaagccagtgctcggcagaggcaaggtagagctgggcgagtg
caaccgggattttgcttccaattgttcacgcagacgaccttcttgaacatgttggagcac
cagattccggagatgcagcgtgttccccttgaagaactctgtttacagatcaaggctgtt
ttatctcctaacacggtggtggaaaaattcgaggcaacaggagtcaatttttcccaagaa
cttgaagaaacgagagcggaaacgactcgcatcgcaacttttttgtcaaaggctatccag
cctccaacagcgtcttcagtgtatgcagcgattcaggtcttgaaacagcttggtgccgtt
gacgagttcgaaaatctcactcctctgggcagaattctagctaaattgacagtgcatcca
agatttggcaaaatgttggtttatggggccctgcttgggtgcctggacccccttctcact
gttgctgctgcagcatgtttccgggatccctttgtgtcgccactgaataggcgggaggag
gctgaccaagtacgggcaagtttcggtaccggagttgcctatggaagtgaccagttggct
ctcgtgaatgcatttcaacaatggaaagctgcggatttcaataatcatggatactctttt
tgcgaggacaattttttagccttcatgacgatgacgcttattgctggtatgaggacgcag
tttgagcggactcttctggaatcaggattgtgcgaaccttacgtgcagtcgcccaatcct
gtcgtgagtgcacaccttgcacggtcgctccttgttgctgggttgtaccctaacatcgtt
cggtcggaactgtgtcgagagagcaagggaatgaaaaatgcaactaaacatgcctacaga
tggaggttagggttctgcggagtgaatggcagggttttcctgcaccccacttctgtgttg
tcagagaagcatctgaactccagtttaagttactatctcgtgttccaagaaaaactccaa
actagccaagtttttattcgagggtgcaccctcttgccacccttggcagtggttctacta
ggttggaacgttactttcatcaaggatgtgagctcggggagtgcaccctctccaaatggg
gactggatgttacttcgagtggaagggtggttgaatttcttcattgaccgtcgggcaggc
cttctcctgcttcaactcagagacgcatttgatgttgttcttgcacgatgggtgagtggg
catgctaggactgactcagaaaggcaggtcgttgagtgtgtggtaacgctactcgaaagt
acttgttatgaaatgctcgagaccactagtaatcgcaaggcccccatagtttctcgctaa
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