Physcomitrium patens (spreading earthmoss): 112286108
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Entry
112286108 CDS
T01041
Name
(RefSeq) DNA repair and recombination protein RAD54-like isoform X1
KO
K10877
DNA repair and recombination protein RAD54B [EC:5.6.2.-]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112286108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppp03400
]
112286108
DNA repair and recombination proteins [BR:
ppp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
112286108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
DEAD
ResIII
HDA2-3
AAA_34
Motif
Other DBs
NCBI-GeneID:
112286108
NCBI-ProteinID:
XP_024383463
LinkDB
All DBs
Position
8:complement(11617054..11625747)
Genome browser
AA seq
1081 aa
AA seq
DB search
MRRSAAPSMLAKKLQEQGKENVINAKSAIFEKAGGSEPFRNIIPSRKRFRTPFTSPQAVV
SPRTKLHSAGGTESYGSEGLAICKGSNVVRDAPTAGRKPSQVLQLMQSRRIGTMSNISST
VSDQCDKLSPQSASPLDLYSASDIVEKVAFEEGNSDLFSKADLETIPGNSSSFESSCAVG
AKRDCPEDGELENASLDVRKKHCPAEKEGEPLLSEKGLCVEQAAAISKETVACAYDRLNE
DLKLDLIPSGGADTVNLKENLESTSNKGEGEPYVHVKEDHNDEVVSLSSKPTNPEETLHG
PHRQFSSLHGVNLLEAVNHTHELPTTVHYLVMYCPRKKNAKRKGPWSDGIIVCQGRSCTL
QDMDSKVVSKSNFQGLKDMPEGATLEVGKFEVEVMRKASNEEVLSGTLYMANKLLPSIPI
QCPLKTLKKQPFKSSKLDGSQQSSRRDKGPFMIPMDAWKLNEDSSTEVPVVVDPYIASKL
RPHQKDGVMFMYECIMGLRSNSFCGCLLADEMGLGKTLQVITLIWTILKQGPGGSPAVKR
VLVVCPSSLVHNWGNEVHKWLGRERLRFMAVHAGTAYREAAQKFADFKAGFSSPLLITSY
EILRKHIDIIASTKPGLLVCDEAHRLKNCAGNKTIDALVGLQCPRKILLTGTPVQNDLNE
FYAMIDFANPGLLGPLSSFKRIFAEPIERSQDRTASEEEQKLGQARSLELQSRTEFCILR
RTANINEAYLPTKTEFFVFCRLHLLQISFYNIITARALRSVYMTENVSATILSSITSLRK
LCSHPQLSYNDIIEGTNLDAELKSQIIAAGLSRFSDSTDNIEVLQSRASLSDEGWKFSGK
LACLYWLLRTVYTSRTARQKDRVVVVSNFTRTLDLIQDMCTSQGWNWLRLDGSTEASKRQ
LLVDQLNSGVGDVFVFLLSSKAGGTGLNLIGANRLVLFDPDWNPATDSQAIARIWREGQL
KPVLIYRLLSTGSIEEKIYQRQIMKGGMSAAVEGDADVHTKKSNIGRHFSKEELKELFTL
NLATNCDTFDLISRTKTAPAKTWMDDSENVDDPALQSAIKSGIVSFVYNDRRPAPQQLAT
V
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgaggagatcggctgctccaagcatgcttgcaaagaaacttcaggaacaggggaaagag
aatgttattaatgcaaaatctgctatcttcgagaaagctggcggaagtgaaccctttcgg
aacatcataccaagcaggaaaaggttcagaacacctttcacctcaccgcaggcagttgtt
tcccctagaacgaagttgcactctgcaggtggaacagaaagctacggatctgaaggactt
gcaatatgtaagggctctaacgtggttagagatgctcccactgcagggaggaaaccctcc
caggtactccaactgatgcaatctagaagaattgggacgatgagtaacatctcctccact
gtctctgaccagtgtgataaactttcgcctcaatccgcaagtccattggatctctattcc
gcatccgatattgtggagaaagttgcattcgaggaaggaaactccgacttgttttcaaag
gcagatctcgaaacaattcctgggaattcttcgtcgtttgaatcctcttgtgcagttggt
gcgaaacgggattgtcccgaggatggcgagttggaaaacgcaagtttggatgttcggaag
aaacattgtcctgctgagaaagagggagaacctctgttgtcagaaaaaggtttgtgcgtc
gaacaagcagcagcgatctcaaaggaaacagttgcttgtgcgtatgaccgtttaaatgaa
gatctcaagctagatctgataccatcgggcggtgcagatacagttaacttgaaagaaaat
ttggagtccacaagcaataaaggagaaggggagccatatgtccatgtgaaggaagatcac
aatgatgaagtagtgtctctcagttcaaagcctacgaatcctgaagagactttgcacggt
ccccatcgccagttctcatctcttcatggtgtaaatttgctagaggcagtgaatcatacg
cacgagctgccgacaacagtgcattacttggttatgtattgcccgcgcaaaaaaaatgct
aagcgaaaaggtccctggtctgatggtattattgtttgtcaagggcgatcgtgcactctc
caagacatggatagtaaagttgttagtaaatcgaattttcaaggattgaaggatatgcca
gaaggagccactcttgaggtcggaaaatttgaggtagaggtgatgagaaaagcttctaat
gaagaagttctcagtggtactttgtatatggctaacaagcttcttccgtcaattccaatt
cagtgtccattgaagacgttgaagaaacagccgttcaaaagttcaaagctggatggatca
caacagtccagccgcagggacaaaggaccattcatgataccaatggacgcttggaagctg
aacgaggattcatctacagaggttcctgtcgtcgtggatccgtatattgcatcaaagttg
aggccgcatcaaaaagatggagtgatgttcatgtatgaatgtatcatgggactaagatcg
aactccttctgcggatgtttgctagctgatgaaatgggtcttggcaagactctgcaagta
atcaccttaatatggacaattttgaagcagggtcctggcggttctccagctgtcaagcgt
gtcctggtcgtttgcccctcgtctcttgttcataactgggggaacgaggttcacaaatgg
cttgggagggagagattgaggtttatggcggtacatgcaggaactgcgtacagggaggct
gctcagaaatttgcagattttaaagctggattctccagtccgctcttgataacatcctac
gaaattctacggaaacacatcgacataattgcatccaccaaaccggggctactggtttgt
gatgaggctcatcgcctcaagaactgtgctggtaacaagaccattgatgctctcgttggg
cttcaatgccctcgtaaaattcttctgaccggaactcctgtccagaacgatctaaacgag
ttttatgctatgattgactttgccaatccagggcttttaggccctctttcttcgtttaag
cggatattcgcagagcctattgagcgaagtcaggatcgcactgcaagtgaagaggagcaa
aagttgggacaagccagatcccttgaacttcaatcgagaactgaattctgcattcttcgg
aggacagcaaacataaacgaagcatacttacctaccaaaacagaattttttgtgttttgc
agattacatctacttcagatctctttctataatatcatcactgccagagcacttaggtcg
gtgtacatgaccgaaaatgtttcagctacgatcttatcctcaataacctctttgaggaag
ttgtgtagccaccctcaacttagttacaacgatatcattgaaggcacaaacctggatgcg
gagctaaaatctcagataattgctgctggattaagcagatttagtgacagtacagataac
attgaagtcctccaatcaagggcgagcctgtcagatgaaggatggaagttttctgggaaa
ttggcatgtttatattggctcctccggacagtttacacaagccgtacagctaggcaaaag
gatagggtggtggtggtttccaattttactcgaacattggacttaattcaggatatgtgc
acgagtcagggttggaattggttacgactggacggttcgacggaagcatctaaacggcaa
ctactcgttgatcaattaaacagtggcgttggagatgtgtttgtgttccttctgtcatca
aaggctggtggaactggtcttaacctgatcggggccaataggcttgtactgtttgatcct
gactggaatccagctaccgactcccaggcgattgctcgtatatggagagaagggcagcta
aaaccagtcctgatatacaggcttctgtcgactggcagcatcgaagaaaaaatctatcag
cgtcagataatgaaaggaggaatgtctgcagctgtggaaggagatgcggatgtccatacc
aaaaagagcaacataggtcgtcatttttccaaggaagagctcaaagagcttttcacatta
aatctggcgacaaattgcgacactttcgacctcatctccaggacaaaaacggctcctgcc
aagacctggatggatgattcagaaaacgttgacgatcctgcgcttcagagtgctatcaag
tcaggaatcgtgtcattcgtgtacaacgacagacgtccagcaccacagcaactcgcaaca
gtctga
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