Physcomitrium patens (spreading earthmoss): 112286419
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Entry
112286419 CDS
T01041
Name
(RefSeq) uncharacterized protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112286419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112286419
03041 Spliceosome [BR:
ppp03041
]
112286419
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
112286419
Spliceosome [BR:
ppp03041
]
Complex B
Other components
Prp19-related factors
112286419
Complex C
112286419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_5
PPR
Motif
Other DBs
NCBI-GeneID:
112286419
NCBI-ProteinID:
XP_024384058
LinkDB
All DBs
Position
1:complement(7431901..7436567)
Genome browser
AA seq
911 aa
AA seq
DB search
MVAVELYPSQEDLFYEEEILRNPYSLKLWWRYVKARSDAPAKKRHVLYERAVRALPGSYK
LWHAYLKEKVDGVRGLSLLHPRYEDLNNTFERALVTMHKMPRLWIMYLQTLTEQKLLTRT
RRTFDRALCALAVTQHDRIWEIYLNFVSQQGVPVETSLRVYRRFLKYDPTHVEDFIEFLQ
MSELWQEAAERLAQVLNDETFYSRQGKTRHQLWLSLCKLLTTHTKDVSGLQADAIIRGGI
RRFTNEVGRLWTSLADYYIRCGLFEKARDVFEEGVMSVVTVRDFSIVFDAYSQFEESILA
AKMEQSTLDTDDRQEEEGDESTQDPHRLVSFEKWIEKSFWLNEENDVDLRLARLENLMER
RPELVSSVLLRQNPHNVHEWHKRVKLFANNPSKQVLTFTEAVRTVDAMKAVGRPHTLWVA
FAKLYESHADVVNARVIFEKAVMVNYKAVDDLAIVWCEWAEMELRHKNLKGALDLMQRST
AEPSVAIKRKVAELGEEPVQLKLHKSLRLWEFYVDLEEGLGTLDSTRKIYERIFDLRIIT
PKIVLNYAALLEDNKFFEDAFKVYERGVQVFKYPHVRPIWSMYLNKFVSRYGGKKLERAR
DLFEQALKEVPEADAKPLYLQYAKLEEDHGLARHALAVYERATKAVEEHEKLSIYDIYIA
RAAEFFGLPRTREIYEHAIESGLPDKDVKTMCIKYAELERNLGEIDRARAIYVHASQSAD
PRSDTEFWSKWNDFEVQHGNEDTFREMLRIKRSVTASYSQMHFILPEYLMQRETGKVSME
EAVDALAGAGISRDDGMAALEKEMASSAGKDGMKALGFVSAGVQSQTDGGAGLERDRKDA
NDEEIGLEDEEEEEDAGVDVAEKSVPDSVFGNLAQVKHAGESNEKGEKREFADAEPLGAK
ERFKRQKKTVD
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggtggctgtggagctctatccgtcgcaggaggatctgttttatgaggaggagatacta
cggaacccttactcgctgaagctatggtggcgctatgtgaaggcgcggagtgatgcgccc
gcaaagaagcggcatgtgttgtatgagagggcggtgcgggcgctgccggggagttacaag
ttatggcatgcgtatttgaaggagaaggtggatggggtgaggggattgtcgctcttgcat
cctcgatatgaagacttgaataatacgtttgagagggctttggtgaccatgcataagatg
ccgaggttgtggattatgtatttgcaaaccctaacggagcagaagctgttgacgcgcacg
cggaggacatttgatcgggcgttgtgcgcgctggctgtcacgcagcacgaccggatttgg
gagatttatttgaatttcgtgtcgcagcagggagtgccggtggagacctcgttgagagtg
tatagacggtttttgaagtatgacccgacgcatgtcgaagatttcattgagtttttgcag
atgtcggagctgtggcaggaggccgctgagaggttagctcaggtgctcaatgacgaaact
ttttactctcgtcaagggaaaacaaggcatcagctctggttgagtctttgcaagctgctt
accacgcacacgaaggatgtttctggtctacaagccgatgctattattcgtggtggaatt
cgtcgattcacaaacgaggttggtcgcttgtggacgtcacttgcagactattacattagg
tgtggattgttcgagaaagccagggacgtatttgaagaaggagtgatgagtgtggtgact
gtgagggacttcagcattgtttttgatgcctactcgcaatttgaagagagtattttagcc
gccaaaatggagcaatcgactttggatactgatgatagacaggaagaagagggagacgag
tctacacaagatcctcaccgattagtgtcgtttgagaaatggatagagaagtcgttctgg
ctcaatgaagaaaacgacgtcgacttgcgccttgctcggttagagaacctaatggagagg
cgacccgagctggtgagcagcgtgcttttgcgacaaaatccgcacaatgtacatgagtgg
cataagcgagtaaagctatttgctaataatccatccaagcaagtattaacttttacggag
gctgttaggacagtggatgctatgaaagcagtcggaaggcctcacacactatgggtggca
tttgctaagctgtatgagtctcatgcggatgtcgtgaatgctagagtcattttcgagaag
gcagtaatggttaattacaaggcagtggacgacctagccatcgtatggtgtgaatgggct
gagatggagcttcggcacaaaaatcttaagggtgcactggatttgatgcagcgctctaca
gctgagccatctgttgctatcaaacgtaaagtggctgagctgggggaagagccggtacag
ctgaaattgcacaagtctctaaggttgtgggaattctatgtcgacttggaggagggcttg
ggtactttggatagtacccgcaagatttacgagaggatttttgacctcagaatcattact
ccaaaaattgtcctgaattatgctgccctactagaggacaacaagttcttcgaagatgct
tttaaagtttacgagagaggagtacaagtattcaaatatccccatgttcgccctatctgg
tccatgtatctaaataaatttgtaagccgctatggagggaaaaaattggaacgtgcacga
gatttgtttgagcaggctttgaaagaggtgcccgaggcagatgctaaacctctgtatcta
caatatgcaaaattggaagaggatcatgggcttgctagacatgcactagctgtgtatgag
cgtgctacaaaagctgttgaagaacacgagaaattaagtatctatgatatttatattgca
cgagcggcagaattttttgggttacccaggactcgtgaaatctacgagcatgcaattgag
tctggtctacccgacaaggatgttaaaaccatgtgcattaagtatgctgagcttgagcgg
aatttaggagaaatagatcgggctcgagcgatttatgtgcatgcatcgcaatcggcagac
ccacgttcagacacagagttctggagtaagtggaatgactttgaagttcaacatggtaat
gaggacactttccgagagatgttacgcatcaagagaagtgtgactgctagttacagccag
atgcactttattcttcccgagtatctcatgcagagggaaactgggaaggtttcaatggag
gaagctgtagatgctctagcaggagcaggcatttcccgtgatgatggaatggctgcgctg
gagaaagaaatggcttcttctgctggaaaagatggcatgaaggctttgggttttgtcagt
gctggagtgcagtcacagactgatggtggggcaggtcttgagagggacaggaaggatgca
aacgatgaagagattgggctagaggatgaagaggaagaagaggatgcaggcgtagatgtg
gctgaaaaatctgttcctgatagtgtgtttggaaacctggcacaggtaaagcatgcaggc
gagagtaacgagaaaggggagaagagagaatttgcagatgctgagccattgggtgcaaaa
gaaaggttcaaaagacaaaagaaaacagtagattag
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