Physcomitrium patens (spreading earthmoss): 112286819
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Entry
112286819 CDS
T01041
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112286819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppp03041
]
112286819
Enzymes [BR:
ppp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112286819
Spliceosome [BR:
ppp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
112286819
Complex C
U5 SnRNP specific factors
112286819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_19
nSTAND3
Motif
Other DBs
NCBI-GeneID:
112286819
NCBI-ProteinID:
XP_024384905
UniProt:
A9RTW1
LinkDB
All DBs
Position
1:complement(25180797..25188976)
Genome browser
AA seq
2180 aa
AA seq
DB search
MAHLGGGAEAHARFKQYEYRANSSLVLTTDTRPRDTHEPTGEPESLYGRIDPRSFGDRVY
HGRANDLEEKLTKHRRKREVKEKEKGSNAEGLKKARKRLRGMQEESVLSIVDDGMYRPKT
KETRAAYEALLSTIQQQFGDQPQDILRGAADEVLGVLKNDRFRDLDKKKEIEKLLNSMSN
ERFAQLVAIGKLISDYSEGGDAGAEGAGEALDDDIGVAVEFEEEEEEDESDYDEVQEESD
GEEGDGQDTRQASAMQMGGQDDEDMEEADEGLNVQDIDAYWLQRKISQAHGDIDPQQSQK
LAEDVLSKLAEGDDREVENRLVILLDYDKFDLIKLLLRNRLKVVWCTRLARAEDEDARKK
IEEEMSNGGPVLAGILEQLHATRATAKERQKNLERSIREEAKKLRDDGGEAADRGRRKDR
EVGVGGGESGWLKGQRQLLDLEQLTFHQGGLLMANKRCELPPLSYRTPKKGYEEVHVPHL
KPKPFAEGEELVKISDMPDWAQPAFKGMKSLNRVQSKVYETALFTSENLLLCAPTGAGKT
NVAMLTILHELGLRKQLDGTFDLSSFKIVYVAPMKALVAEMVGNFSERLEPYGVTVRELT
GDATLSRGQIEETQIIVTTPEKWDIITRKSGDRTYTQMVKLLIIDEIHLLHDNRGPVLES
IVARTVRQIETTQEMIRLVGLSATLPNYEDVALFLKVDEKKGLFYFDNSYRPCPLAQQYI
GVTVRKPLQRFQLMNDICYEKVMEVAGKHQVLIFVHSRKETAKTARAIRDAALANDTLGR
FLKEDGASREILQKENDVVKNNDLKNLLPYGFAIHHAGMGRADRTLVEDLFGDGHIQVLV
STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQFDTYGEGIII
TGHSELQYYLSLMNQQLPIESQYISKLADNLNAEIVLGSVQDAREACDWLGYTYLYIRML
KNPTLYGVSREALEADPSLEERRADLVHSAAIVLDRNNLVKYDRKSGYFQVTDLGRIASY
YYISHGSMATYNEHLKPTMGDIELCRLFSLSEEFKFVTVREEEKMELAKLLDRVPIPVKE
SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQLAEK
ALTLCKMVSRRMWSSQTPLRQFKGIPNDILSKVEKKDLPWERYYDLSSQEIGELIRYPKM
GKSIHRYIHQFPKLELAAHVQPITRSVLKVDLTITPDFQWDEKYHGYVESFWVIVEDNDG
ENILHHEYFLLKMQYVEEDHNLSFTVPIYEPLPPQYFVRVVSDRWLGSETVLPVSFRHLI
LPEKYPPPTELLDLQPLPVSALRNPSYEVLYQKFRHFNPIQTQVFPVLYNTDDNVLVAAP
TGSGKTICAEFAVLRMLQKGEAGGRCVYIAPVEALAKERLRDWESKFGRTLGVRVVELTG
ETATDMKLLEKGQIIISTPERWDVLSRRWKQRKHVQQVSLFVVDELHLIGGEGGPVLEVI
VSRMRYIGSQTENQIRIVALSTSLANAKDLGDWIGASSHGLFNFPPGVRPVPLEIHIQGV
DIANFEARMQAMTKPTYTAIVHHVKKQEPALIFVPTRKHARLTALDLVTYATVNGNGKSP
FLHCAEADLAPFLSKVKDEALIHALLQGIGYLHEGLSAIEQEVVTSLLTAEAIQVCVATS
SMCWGMTLSAHLVVVMGTQFYDGRENAHTDYPITDLLQMMGRASRPQVDTSGKCVILCHA
PRKEYYKKFLYEPFPVESHLDHYLHDHLNAEVVVRTIENKQDAVDYLTWTFMYRRLTQNP
NYYNLQGVSHRHLSDHLSELVESTLSDLESSKCVAIEDDMDLSPLNLGMIAAYYYISYTT
IELFSSSLTAKTKLKGLLEILSNASEYTRLPMRPGEDELIRKLVMHQRFSMDKPKFTDPH
VKANALLQAHFARHSVSGNLALDQRDILIDASRLIQAMVDVISSSGWLHPALAAMELSQM
VTQGLWERDSYLLQLPYFTKDLAKKCADNPDKPIQTVFDLVEMEDDERRELLQMSDAQLM
EIARVCNRFPNIDLAHEVLDNDDISPGDTVTLQVTLEREMEGRQELSPVDAPRFPKPKEE
GWWLVVCEPKSNQLLAIKRVSLQRRSKVKLDFTAPNEVGRKTYTLFFMCDAYLGCDQENE
FTIDVKEGVDAEDDGNAMEE
NT seq
6543 nt
NT seq
+upstream
nt +downstream
nt
atggcacatctcggaggaggcgcggaagcgcacgcgcggttcaagcagtatgagtacagg
gctaattcgagtttggtgttgacgacggatactcggcctcgggacacgcacgagccaact
ggagagccggagagtttatatggcaggattgatccgaggtcgtttggggatcgagtgtat
catggtcgtgctaatgatttggaggagaagctgacgaagcataggcggaagagggaagtg
aaagagaaggagaaggggagtaatgcggaaggactgaagaaggcgaggaagcggttgcgt
gggatgcaagaggagagcgttctgtccattgtggacgatgggatgtatcggccgaaaacg
aaggagacgagggctgcgtatgaggctttgttgagtacaattcagcagcagtttggggat
cagccgcaggatattttgcgaggggcggcagatgaagtgcttggggtattgaagaatgat
aggttcagggatctggataaaaagaaggaaattgaaaagttgttgaactctatgtcgaat
gagcggttcgctcagctggttgctatcggcaaacttattagtgattactcggagggaggg
gatgctggagcggaaggggcaggagaagctctggacgatgatatcggagtagctgtagaa
ttcgaggaggaagaagaagaggatgagagcgactatgacgaggtgcaagaagagagtgat
ggtgaagagggagatggtcaggatacccgtcaagcatcggctatgcaaatgggcgggcag
gatgacgaggatatggaagaagcggatgaagggttaaatgtgcaagacatagatgcttac
tggctgcagaggaaaatctcgcaggcacatggggacatcgatccccagcaaagccagaaa
cttgcggaggatgttttgagcaaattggcagagggagatgaccgcgaagtagaaaatcgt
ttggttatacttctggactatgacaaatttgatttgatcaagctcttgcttcgaaatcgt
ctcaaagtcgtttggtgtactcgacttgcgagagcagaggatgaagatgcaaggaaaaag
atagaggaagagatgagcaacggaggtcccgttttggcaggtatacttgagcagctgcat
gctaccagggcaactgcgaaggaacgtcagaagaatttagaacgtagcatcagagaggag
gccaagaagttgagggacgatggcggtgaagctgcagacagaggtcgaaggaaggacaga
gaagtcggtgtcggtggaggcgagagtggatggctcaaggggcagcggcaattactagac
ctagagcagctgacattccaccaaggagggttattgatggcaaacaagaggtgcgagcta
cctcccctgtcctatcgaacccctaagaaggggtatgaagaagtgcacgttcctcatttg
aaaccaaaaccgtttgcggagggggaagagctcgtgaaaatcagtgatatgcctgattgg
gcccaaccagcgttcaaaggcatgaagtccttgaatagagttcagagcaaagtctacgaa
actgccctatttacgtctgagaatcttcttttgtgtgctccgactggtgctgggaagacc
aatgtggctatgctcaccattttacacgaacttggtttgagaaagcagctagatggcact
tttgacctcagttcattcaaaattgtgtatgtagcacctatgaaggctcttgtcgcggag
atggtgggtaatttctccgagcgcttagagccatatggagttaccgtgagggaactgact
ggagatgccactctctcgcgagggcaaatcgaggaaactcagattatcgtcactacacct
gagaagtgggatatcattacgaggaagtccggggaccggacttatactcagatggtaaag
cttctgattattgatgagatccatcttctgcatgacaatcgtggtcctgtgcttgagagc
atagtagctcgaacggtgaggcagattgaaaccacccaagagatgattcgattggtggga
ttatcagccacgctgccaaattacgaggatgtggcgttgtttctgaaagtggacgaaaag
aaaggattgttttattttgacaacagctatcggccgtgtcccctggcgcaacagtacatc
ggagtcacggttcggaagcctctacaacggttccagctgatgaacgatatctgttatgag
aaagtaatggaggtagctggaaaacaccaggttctgatattcgttcattccaggaaggaa
acagcgaagacagctcgtgcaataagagatgctgctttggcgaacgatacgctgggacga
ttcttgaaggaagacggtgctagtcgggaaattcttcagaaggaaaatgatgtggtaaag
aacaatgatttgaagaatctactcccttatggtttcgctattcatcatgcaggtatgggc
agggccgatcggacgctagtggaggatctatttggggatggccacatacaggtgttggtc
tctaccgccacccttgcctggggcgtcaatctcccggcacataccgtgattataaaggga
actcagatttacaatcctgaaaaaggtgcctggaccgagctaagtccgctggatgtaatg
caaatgttggggagagctggtcggccacaatttgacacttacggggagggtattattatt
actggacacagtgagcttcagtactatctatcattgatgaaccaacagcttcctatcgag
agtcagtacatatcgaaactggcggacaatctcaacgcagagattgtgttaggcagtgtg
caggatgcacgtgaggcttgtgactggctaggatacacctacttatacattcgaatgctg
aagaatccaaccctttacggggtgagtcgtgaggctcttgaggctgacccttcattggaa
gagcgacgagcagaccttgtgcactctgcagcaattgtattggataggaataacttagtg
aagtacgacaggaagagcggatactttcaggtcactgatcttggacgtattgctagttat
tactacatctcacatggttctatggctacttataacgagcacttaaagccaacaatgggg
gacattgaattgtgccgcctattctcgctttccgaagaatttaaattcgtcactgttcgg
gaggaggaaaaaatggagcttgcgaagctgttggatcgggtgcctattccagtgaaagag
agtttggaggagcccagcgcaaagatcaatgtgctgctacaagcatatatctcacagctg
aaattggaaggcttgtctctaacatcggacatggtttttattacccagagtgccggacgg
ttgatgagagctctttttgagatagtgttaaagcgcggttgggcacaactagctgagaaa
gctctcactctctgcaagatggtgagtaggcgaatgtggagcagtcaaactccgcttcgc
caatttaagggaattccaaacgacattctcagtaaggtcgagaagaaggacctaccatgg
gagcgttattatgatttatcgtcccaggagatcggagaactgatccggtatccgaagatg
ggcaaatcaattcacaggtatatccatcagtttcccaaactagaactggcggcccatgta
cagcctatcactcgctctgttctgaaggtggatctgacgataacccctgattttcagtgg
gatgaaaagtatcatggttacgttgagtctttttgggtcatcgttgaagataatgacggc
gagaatattttgcatcatgagtatttcctactaaagatgcagtacgttgaagaagaccac
aatttgagcttcacggttcccatctacgagcctttaccgcctcagtattttgtgcgagtt
gtgtcggaccggtggttgggctcggagacagttctacccgtttctttccggcacctcatt
ttgccggaaaagtacccgccacccacggagcttcttgacttgcagcctcttccagtgtct
gcgctgcgcaatccttcatacgaggtgttgtatcagaagtttcggcatttcaatcctata
caaacacaggtgttccctgttctttacaacacggatgataatgtgctggtggcagctcca
actggcagtggaaagaccatttgtgcagaatttgccgtactgcgtatgctgcagaagggg
gaggctggtgggcgttgtgtgtacattgcaccagtagaagcacttgctaaggaacgactt
cgtgattgggagtctaagtttggcagaacgttaggagtgagagtggtggagctcactggg
gagacagctacagacatgaagctgttggaaaaaggtcagattatcataagcactccggag
aggtgggatgttctctctcgtcgttggaagcaaaggaagcatgtgcaacaggtgagtctg
ttcgtggtcgacgagttgcatctcatcggtggagaaggtggacctgttcttgaggtgatt
gtctctcgcatgcgttacattggtagccaaacagagaatcaaatccgtattgttgctctg
tcaacgtccctagcaaatgctaaagatctgggagattggattggagccagttctcatggg
ttgttcaacttccctcctggtgttcgcccagttcctctagaaatacatatacagggtgta
gacattgcgaatttcgaagctcgtatgcaagctatgacaaagccaacttatactgcaata
gttcatcacgttaaaaagcaagaacctgctctgatatttgtacctactcggaagcacgca
cgtttaacagccctggatttggttacttatgccactgtgaacggaaatgggaaatcgcct
ttcttacactgtgctgaggcagatcttgctcccttcttgtcgaaggtgaaggacgaagcc
ctaattcacgcactgctccagggtattggttatttgcacgaaggtttgtctgccattgag
caagaagtggtaacaagtttgctcactgcggaggccatacaggtttgtgttgctaccagt
agtatgtgctggggtatgactctgtcagctcatctggtggttgtaatgggaactcaattt
tatgatggacgtgagaacgctcacacagactacccgattactgatttattacaaatgatg
ggacgagccagtcgtccgcaagttgacacatccgggaagtgtgtgattctttgtcatgct
ccccggaaggagtattacaagaagtttctgtatgaacctttccctgtggagagccatttg
gatcactacctgcatgaccatttgaatgcagaagtagttgtgcgcacaatcgaaaataag
caggatgctgtggactacttgacgtggacatttatgtaccgtcggctcacgcagaaccct
aactactacaatctgcaaggtgtaagccatcgtcatttgtcagaccatctctctgagctt
gtggaatccacattatcagatctggaatctagcaaatgcgttgcgatagaagatgatatg
gacctttcacctttgaatcttggaatgattgcggcctactactacatcagctatactact
attgagctgttcagttcttcactgacggctaagaccaagctgaagggccttcttgagatc
ctctccaatgcttcagaatatacgcgtctacccatgaggcctggagaagatgagttaatc
cggaagttggtcatgcatcaacgtttctcaatggacaagccaaagttcactgatcctcat
gtaaaggcaaatgctcttctgcaagctcattttgcgaggcatagcgtgagtggtaacctt
gcactggatcagagagatattctgatcgatgcaagccgattgattcaagctatggttgat
gtgatttcaagttctggatggttgcatcctgctttggcagctatggaacttagtcagatg
gtaactcaaggtttgtgggagcgtgattcttatctacttcagttaccatacttcacgaaa
gacctggcaaagaagtgcgcagacaacccagacaaacctatccagacggttttcgattta
gtcgaaatggaggatgatgaaagaagagagcttctgcagatgagtgatgcccagttgatg
gaaattgctagggtttgcaatcgcttcccaaatatcgatcttgctcacgaggttctagat
aatgatgacatttctccaggcgacactgtcacgcttcaggtaacacttgaaagagagatg
gaaggaaggcaagaattaagtcctgtggatgctcccagatttccgaaaccaaaggaggaa
ggttggtggctagttgtgtgcgaacccaagagcaatcagttgctggcaattaaacgtgtc
tctttacagcggagatcaaaagtgaagcttgattttactgcaccaaatgaagtgggaagg
aagacctatacccttttctttatgtgtgatgcttatcttggttgtgaccaagaaaatgag
ttcaccattgatgttaaggagggtgttgatgctgaggacgatgggaatgcgatggaggag
tag
DBGET
integrated database retrieval system
