Physcomitrium patens (spreading earthmoss): 112286895
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Entry
112286895 CDS
T01041
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112286895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppp03041
]
112286895
Spliceosome [BR:
ppp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
112286895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_WDR3_2nd
EIF3I
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_EML
PRP4
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
WDR90_beta-prop_4th
Beta-prop_Aladin
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_Nup120_160
WD_LRWD1
PROPPIN
WD40_like
Beta-prop_IFT122_2nd
Beta-prop_SPT8
Beta-prop_WDR75_2nd
Motif
Other DBs
NCBI-GeneID:
112286895
NCBI-ProteinID:
XP_024385031
UniProt:
A0A2K1K2V4
LinkDB
All DBs
Position
9:8100139..8103961
Genome browser
AA seq
541 aa
AA seq
DB search
MADSSLPPGVTLEEDVDMDHPRYPSLGPAPDNGEPSSPDDSPDSPTAEPMENDEHLYQVS
EESQRARERKEQLVQQLLMRRRATALAVPTNDSAVRQRLRHLGHPITLFGEREMERRDRL
RAVMAKLDADGELDKLVQAHEASADAHADEAHHETVQDDVPPLQLFYTEGSAELLEARKQ
ILRYSLRRSWTRIERAKRKRNDPDEDEDAEIDEVLKSMEETSLDCSEIGDGRPLSSCSFS
PDASLLATSSWTGVAKLWSMPDVQHLATFKGYHTERVTDVVIHPGACKSQDAGAGNVATA
SADRTAILWSLEGKKLQSYEGHLDRLARIAFHPSGLYLGTASFDKTWRLWDVSTGIELLL
QEGHSRSVYGIAFQQDGALAASCGMDALSRVWDLRTGKSILALEGHVKAVYGVDFSPNGY
HLATGSDDHTCRVWDLRKKQCLYVIPAHNSLVSQVKYDPSDGYFLVTASFDNTSRIWSGR
DFKPVKTLAGHESKVAGIDVSTDGSYIATVSHDRTIKLWSHYKSWSYDKSEFMNETMSNA
E
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggcggactcctccctccctcctggtgtaactctcgaggaagacgtcgatatggaccat
cctcgctacccgagtcttggccctgctcccgacaatggcgagccttcctccccagatgat
agccccgactcgcccaccgctgaacctatggagaacgatgagcacctctatcaggtctcg
gaagagagtcagcgcgctcgcgagcgtaaggagcaactcgtgcaacaattgctgatgaga
cgtcgcgccactgctctcgcagttccgaccaatgattccgcggttcgccagcgcctccgt
cacctcggccaccccattacgctctttggtgagcgagagatggaacgccgtgaccgtctc
cgcgctgtcatggctaagcttgacgccgatggagagctggacaagttggtccaagcgcat
gaggcctctgctgatgcgcatgctgatgaagctcatcatgagaccgttcaagacgatgtt
ccgccattgcagttgttttacaccgaaggcagtgcagagcttcttgaagctcgcaagcag
attttgaggtattctcttcgacgctcgtggacacgaattgagagggctaagagaaagcga
aatgacccagatgaggatgaagacgctgaaattgatgaagtgttgaaatctatggaggag
acgtcgctggattgcagtgagattggtgacggcaggcctctatcttcttgctcgttctct
cctgatgcatccttgctagctaccagttcctggacaggtgtggccaaactctggagtatg
cctgatgtacagcaccttgctacatttaaaggttatcacaccgaacgtgtgaccgatgtt
gtgattcaccctggagcctgcaagtcccaggatgctggggcaggaaacgttgcgacagca
tctgctgatcggactgctatattatggagtttagaaggaaagaaacttcaatcgtatgaa
ggtcacttagatcgccttgccagaattgcattccatccttcaggtttatatcttggaact
gcaagttttgataagacttggaggctttgggatgtgagcacgggcattgaactgttgcta
caggagggtcacagccgtagtgtatatggcattgcatttcagcaggatggagcgttagca
gcatcatgtgggatggatgcactgagtcgagtatgggatttgcgaactgggaaaagtatt
ctagctttggaaggtcacgtcaaagcggtgtatggtgtcgatttctcgccaaatggttat
catttggcgacgggtagtgatgaccatacatgcagggtgtgggacttgcgtaagaagcag
tgtctttatgtcattcctgctcacaattctcttgtctctcaagtcaagtatgatccttca
gatggttacttcttggtcacagcctcgtttgataatacatctcggatatggtctggccgt
gattttaaaccagtgaagacgcttgcaggccatgaaagtaaggttgctggaattgatgta
tcaacagatgggagctatattgcaactgtttcacatgatcgaacaatcaagttgtggtct
cattacaagtcgtggtcttacgacaaatctgaattcatgaatgagacgatgtcaaatgct
gaatga
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