Physcomitrium patens (spreading earthmoss): 112287773
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Entry
112287773 CDS
T01041
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112287773
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112287773
03041 Spliceosome [BR:
ppp03041
]
112287773
03009 Ribosome biogenesis [BR:
ppp03009
]
112287773
03016 Transfer RNA biogenesis [BR:
ppp03016
]
112287773
Enzymes [BR:
ppp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112287773
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
112287773
Spliceosome [BR:
ppp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
112287773
Complex C
U4/U6.U5 tri-SnRNP related factors
112287773
Ribosome biogenesis [BR:
ppp03009
]
Eukaryotic type
Pre-60S particles
Helicases
112287773
Transfer RNA biogenesis [BR:
ppp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
112287773
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
112287773
NCBI-ProteinID:
XP_024386921
UniProt:
A9S993
LinkDB
All DBs
Position
10:complement(5055853..5064218)
Genome browser
AA seq
1016 aa
AA seq
DB search
MAGAVEAENDTAKRKNPEPVTNGAAQATDEEAPEAKRRSVIRSCIHEVALPPGFTPSKDE
SIHGTIDNPVYTGPRAKSYPFTLDPFQEISVACLERDESVLVSAHTSAGKTAVAEYAIAM
AFRDKQRVIYTSPLKALSNQKFRELSEEFTDVGLMTGDVTISPNASCIVMTTEILRGMLY
KGSEVLREVAWVIFDEIHYMRDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWIC
YLHKQPCHVVYTDFRPTPLQHYAFPMGGSGLYLVVDEKGDFKEENFNKLKATFERKEVGG
NEIDPPSTRGGRGGRGARGRGVGGRGGRGGDKGSGSSQDIGKIVKMIMERKFQPVIVFSF
SRRECEQYATAMSKLDFNNDEEKEAVEDIFKKAIEVLSEEDRSLPAIDLLLPLLKRGIGV
HHSGLLPILKEVVELMFQEGLCKALFATETFAMGLNMPAKTVVFTNVRKWDGQSHRWMSS
GEYIQMSGRAGRRGKDLRGICIIMIDSQMEMKTCQEMIQGTAAPLVSTFRLSYYSLLNLM
SRAEGQFNSEHVIRHSFHQFQHDKALPKVEENIKTLEAEVAKIDSAGESSMAEYHSLRLK
LAQLEKKMMAEVLRPERVLLFMKPGRLVKIRDGSDEWGWGVVVHVVKKPTSNQGTISSAL
ATDPASSYIVDILLHCASGVIQEGKRPRPRPCPPGEKGEMHVVPVRMPLICAISTLRVAA
PRDLRPPEARQSVLMAVQELERRFPDGFPKLDPVEDMGIDDEDFLKIVKEIEVEEKKLVS
HPLFQSEKEADCFASFQRKAELMVEIDALKLRMRESQLQKFREELKNRSRVLKRLGHING
DGVVQTKGRAACLIDTADELLVTELMFNGLFNDIDHHQVVAIASCFLPVEKSNEQVRLTN
ELAHPLEKLKETAKQLAEIQKECKLEIDVEEYAESFKPYLMDVIYSWSKGSSFSEICEMT
DIFEGSIIRAARRLDEFLNQLRSAAQAIGNPDLENKFALGSESIRRGIVFANSLYI
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgcggtagaggctgagaatgatacggcgaagagaaaaaatcctgagccggtg
actaatggcgcagctcaagcaacggacgaagaagcccctgaagcgaagcgacgtagtgtt
attaggtcgtgtattcacgaggttgcccttccgccagggtttacgccttctaaagatgag
agcatccatggcacaatcgacaatcctgtctacacaggtccaagagcgaagagctatcct
tttacactcgacccttttcaggagatttcagttgcttgtttggagcgagatgaatcagta
ttggtgtcagctcatacctctgcaggaaaaacagctgttgctgagtatgcgattgcaatg
gcttttcgtgataagcaaagagttatttacacttctccactgaaagctctgagcaaccag
aaattcagggagttgagcgaggaatttactgatgtaggcctaatgacaggagatgtaaca
atctcgccaaatgcttcctgcatcgttatgacaacagaaatcctccgaggaatgctctac
aaaggttcagaagttttgagggaggttgcatgggttatttttgatgagattcattacatg
cgtgatcgagagcgaggagtcgtgtgggaagagagcattatttttcttcctcccgctatt
aaaatggttttcctctccgccacaatgtctaatgccacagaattcgcggaatggatatgt
tacttgcacaaacagccatgtcatgtagtatatacagattttcgtcctacgcccttgcag
cattatgcttttcctatgggcggttcaggtctctatcttgttgtggatgagaaaggggat
tttaaagaagaaaattttaataaactaaaggcgacctttgagaggaaagaagttggtgga
aatgaaatagatcctcccagcactcgtggtggccgtggagggcgtggagcacgagggcgt
ggggttggtggaagaggtggcagaggaggagacaaaggatctggctcaagtcaagacatc
ggcaaaattgttaagatgataatggagaggaaatttcagccagtgattgtcttcagtttc
agtcggcgagaatgtgaacaatatgcaaccgccatgtcaaagctggattttaataatgat
gaagagaaagaggccgtcgaagacatctttaagaaagctattgaggtgcttagtgaggaa
gatcgaagtcttccggcaatcgatcttcttttgccactgttgaaacgaggcattggtgtt
catcattctggtcttcttcctattctcaaggaggttgttgaacttatgtttcaggagggc
ctctgcaaggcattgtttgctacagaaacttttgctatgggattaaatatgccagctaag
acagttgtgttcacgaatgttcgcaaatgggatgggcaaagccatcgatggatgtcatcg
ggagaatacattcagatgagtggtcgagcaggacgacgaggcaaggatttgcgtggaatt
tgtataatcatgatagacagtcagatggaaatgaaaacatgtcaagagatgatacaaggg
actgcagctcctttagttagcacattccgtctcagttactactcacttcttaatctcatg
agtcgggctgaaggacagtttaattctgagcatgtgattcgtcattcatttcaccagttc
cagcatgacaaggcattgcccaaggttgaagagaacataaaaactctggaagctgaagtc
gcgaaaatcgattctgcgggagagtcatcgatggcagagtaccattctttaagattaaaa
cttgctcaactggaaaagaaaatgatggcagaggttctgcgccctgagcgtgttctgctg
ttcatgaaacctggacgattggttaaaattagggatggaagtgatgagtggggttgggga
gtggtcgtacatgtagtgaaaaaacctacatccaatcaaggaacaatttcttctgcgttg
gcaaccgatccagctagttcctatatagtagatattctcctgcactgcgcgtcaggagta
attcaagaagggaaacggcccagaccgagaccatgtcctccaggagaaaaaggggaaatg
catgtggtcccagtacgcatgccgctgatatgtgcaataagtactctaagagttgcagct
ccacgggatctaaggcctccagaggctcgacaaagtgttctaatggctgttcaggaactc
gaacgtcgttttcctgatggttttcccaagcttgatcctgttgaggatatgggcattgat
gatgaagactttctgaagattgttaaggaaattgaggtggaagaaaagaagctggtctct
caccctcttttccagtcagagaaagaggcagattgttttgcttcttttcaaaggaaggcg
gaacttatggtcgagattgacgcgttgaaacttaggatgcgagaatcccagctgcaaaaa
tttagggaagaattgaagaataggtcaagggtattgaaacgacttggccatataaatggt
gatggcgtggtgcaaacaaagggtcgtgcagcctgtcttatagatactgccgatgagcta
cttgtaaccgagcttatgttcaatggtttgtttaatgacatagatcatcatcaagttgtt
gctatagcaagctgttttcttccagttgagaaatcgaatgaacaagtacgattgacgaat
gagcttgcacatccgctagaaaagcttaaggaaacagctaaacaacttgctgagattcaa
aaagagtgcaagctggagattgatgttgaagaatatgcggaatcattcaagccatatttg
atggatgtcatctatagctggtcaaagggttcctcgttctctgaaatttgtgagatgacc
gacatttttgaaggtagcatcatacgtgctgctcgcaggcttgacgagttcctgaaccag
ctacgcagtgctgcccaagcaattggaaatccagacttagaaaataaatttgcgcttgga
agtgaaagtatacgacgcggtattgtcttcgccaactcactctacatttaa
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