Physcomitrium patens (spreading earthmoss): 112287938
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Entry
112287938 CDS
T01041
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112287938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppp03041
]
112287938
03009 Ribosome biogenesis [BR:
ppp03009
]
112287938
Enzymes [BR:
ppp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112287938
Spliceosome [BR:
ppp03041
]
Complex A
U1 snRNP components
U1 related factors
112287938
Complex B
112287938
Ribosome biogenesis [BR:
ppp03009
]
Eukaryotic type
Pre-60S particles
Helicases
112287938
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
112287938
NCBI-ProteinID:
XP_024387364
UniProt:
A0A2K1L7W2
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All DBs
Position
1:complement(9043548..9046800)
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AA seq
582 aa
AA seq
DB search
MPYVPPHLRAGAAPAAAAPASSGGAAARRDGGRDSYGGSFGASAGARRSASEGFSGNGSS
GYGNGYGSYGRESTGGSREGSAARGVGHPEVVWPDWKPSERVRKLLPEQIAEVRARLNVD
VEITPDTEPAPAPIESFEDMCLHLSIMKDVTFHNYTTPTPIQAQALPVALSGRDLLGCAE
TGSGKTAAFSLPMIQHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSAEGFKT
SIVVGGTNIYEQRSELRAGVEIVVATPGRFIDHLQQGNSSLSRVSYVVLDEADRMLDMGF
EPQIREVMRSLPKKHQTLLFSATMPEEIEALAQEYLNKPVRVKVGRVSSPTANVTQNLEK
ITEKEKIDSLLALLVDEHSQSLDSNQPPPLTIVFVERKARCDEVTDALVEQGLKATALHG
GRSQSEREAALRDFRKGTTNILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTG
RAGASGRATSFYTERDVFLVAQIRRAITEAESGNTMAFATGKAARRKEREQAAAFREGRM
TPLGVAQVGATTVRVDDKYKHMLSATADPKKGEGAADDAWED
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgccctatgtccctccacatctgagggcgggagccgccccagcagcagcagcaccggct
tctagcggtggcgcagcagcacgcagagacggaggtcgagactcgtatggcggtagcttt
ggagcgagcgcgggtgccaggagatcagcgtcggaggggttttctgggaacgggagcagc
ggctatggcaacggatatggatcatatggtcgggagagcacgggggggagcagagagggg
agcgcagcgcgcggggtagggcaccccgaggtggtgtggccggactggaagccgtcggag
cgcgtgcggaagctgttgcccgagcagattgcagaggtgagggccaggctcaatgtggac
gtggagattacgcccgacacagagccggcgccggctcccatcgagtcgtttgaggacatg
tgcctgcatttgagcatcatgaaggacgtgacgttccacaattacacaacgccgacgccc
atccaggcgcaggctttgccggtggcattgtctgggagggacctgctgggatgcgcagag
acggggtcggggaagaccgccgcgttctcgctgcctatgatccagcattgtctggcgcag
ccgccgattcgcagaggggatggcccgttggcactggtgttagcgcccacgagggagctg
gcgcagcagattgagaaggaggtgaaggcgttcagccggtcggcggaggggttcaagacg
tcgatcgtggtgggagggacgaacatttacgagcagaggtcggagctgcgggccggcgtg
gagatagtggtggccactcctggtaggttcatcgatcacttgcagcaggggaacagttct
ctgtcgagggtgtcgtacgtggtgttggacgaggcggacaggatgctggacatgggtttc
gagcctcagatcagggaggtgatgagaagccttccgaagaagcaccaaaccctacttttc
agcgcgacaatgccggaggagatcgaggctctggcgcaggagtacctgaacaaaccggtg
cgggtgaaggtgggaagagtgagcagcccgacggcgaacgtgacgcagaacctggagaag
atcacggagaaggagaagatagacagcttgctggctctgctggtggacgagcattcgcag
tcgttggattccaatcaaccaccgccactgacgatcgtgttcgtggagcggaaggcacgc
tgcgacgaggtgacggatgcgttggtggagcaagggctgaaggcgacggcgctgcacgga
gggaggagccagagcgagagagaggcggcactgagggacttccggaaaggcaccacgaac
atcctggtggcgacggatgtggcttcgcgagggttggacgtgacaggtgtggcacacgtg
atcaacttggacctgccgaagaccatggaggattacgttcatcggatcgggcgaacgggt
cgtgcaggggcctcgggacgagcgacgtccttttacacggagcgagacgtgttccttgtt
gctcaaatccgaagggcaatcacggaagcggaatccgggaataccatggcgttcgctaca
ggcaaagctgcgaggcggaaggagagagagcaagcggcggcgttcagagaagggaggatg
actcctctgggagtggctcaagttggtgcgacgacagttcgcgtggacgataagtacaag
cacatgctttctgctacggcagatccgaagaagggcgaaggggcagcggacgacgcatgg
gaagactag
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integrated database retrieval system
