Physcomitrium patens (spreading earthmoss): 112288488
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Entry
112288488 CDS
T01041
Name
(RefSeq) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112288488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppp03021
]
112288488
03400 DNA repair and recombination proteins [BR:
ppp03400
]
112288488
Enzymes [BR:
ppp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112288488
Transcription machinery [BR:
ppp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
112288488
DNA repair and recombination proteins [BR:
ppp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
112288488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
HSP70
RNA_pol_L
RNA_pol_A_bac
HHH_XRCC3_RpoA
HHH_5
RNA_pol_L_2
Motif
Other DBs
NCBI-GeneID:
112288488
NCBI-ProteinID:
XP_024388455
LinkDB
All DBs
Position
11:11123072..11127117
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AA seq
525 aa
AA seq
DB search
MATVMGAQAVADAVRAVAPFISESGRSSRRNPFSGRDTMRKIELGGRMVARRVKGLDYGR
FKRNSTVVASVEGGNNFTMVRSAPGDEFDKRIVEWVAEDFERVNGVDLLKDSQSVLRLTE
AAEKAKRELASASQANLSLSFITTTADGPMDIETTLTRDIFLELCSDLLDKRYPTGMSST
KVLTEVERVVSQSSTQSPLQWRCVETFKENDHRHYARFAVSPFRQGQAITVGNALRRALL
GEVQGAAITCATFKDMGIVHEYQAVDGIQETVQDILLNVRDVAIGSNTHEPQKAFISVMG
PRQVIAGDILCPPSLVVPDPSQNIALVTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYI
DSVFMPVVQANYSVHSFEVEDVTREILFLEIYTNGSISPEEALIEAARSLIDLLLPLLES
EVIEVTNTTEKENGSRNISMLSSFLSSSDQITKEVTYKHVFIDQLKLPARAYNCLKRANI
HTVSDLLDYTQDDLMRIKNFGKKSVEEVLEALRAQFNISLPKSKA
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atggcaactgtcatgggcgcccaggccgtggccgatgctgtcagggcagttgcgcccttc
atttcagagtctggaaggagctctaggaggaatcccttttcgggaagggatacgatgagg
aagatagaacttggaggcagaatggttgcaaggagggtgaaaggtttagactacggtaga
tttaagaggaattcgactgtagttgcgtccgtggaaggaggcaataattttaccatggtg
cggtcagctcccggcgacgaatttgacaagcgcattgtggaatgggtagcggaagatttc
gagagggtaaatggagtagaccttttgaaggacagtcaatccgtactgaggcttacagaa
gctgcagaaaaggccaagagggagttggcttcggcttcgcaggctaatctcagtttgtcg
tttattactaccactgcggacggacccatggacattgagaccacccttacccgggacatc
ttcttggagctttgctctgacttactcgataagcggtaccctactggaatgtcatctact
aaagtcctaactgaggtggagagagtggtttcacagagtagcacgcaaagtccattgcag
tggaggtgtgttgagacttttaaagaaaatgatcatcggcattacgctcgatttgccgta
tctccatttcggcaaggtcaagctatcacagttggaaatgctttgaggagagcattatta
ggagaagttcagggagcagctattacatgtgctacttttaaagatatgggcattgtacat
gaatatcaggcagttgacggtattcaagaaacggtgcaggacatcttgttgaacgtgagg
gacgtcgctattggaagcaacactcacgaaccacagaaagcgttcatatctgtgatggga
cctagacaagtgattgctggggatatactttgtcctccctctcttgttgtacctgaccca
tcccagaatatagctcttgtgaccgcagcgattcccttcaacgttgagattgaagttgaa
aaggacgtgggctaccgcattgtggatcctgggaagtctacaaatggacggttttatata
gattctgtttttatgccggttgttcaggcgaattatagtgttcattctttcgaggtcgag
gatgtaacacgagaaatactattcctggagatatataccaacggcagcattagccctgaa
gaagctctcattgaggctgcccgtagtttgatcgatttattgcttcctctcttagaatca
gaggtgatagaagttacgaacaccactgagaaggagaatggttcaaggaacatttccatg
ctttcttcatttttgtcgtcatctgatcagattacgaaagaggtcacttacaaacacgta
tttattgaccagttgaaactgcccgctagagcctacaactgccttaagcgagccaacatc
cacacagtatcggatctgttggattatactcaagatgatttgatgagaatcaagaacttt
gggaagaagtctgtcgaagaggtgttagaagctctacgagcacagttcaacatcagccta
cctaagagcaaagcttag
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