Physcomitrium patens (spreading earthmoss): 112288566
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Entry
112288566 CDS
T01041
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03013
Nucleocytoplasmic transport
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112288566
09122 Translation
03013 Nucleocytoplasmic transport
112288566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112288566
03041 Spliceosome [BR:
ppp03041
]
112288566
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
112288566
Spliceosome [BR:
ppp03041
]
Complex C
Other components
EJC/TREX
112288566
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112288566
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
DUF5093
Motif
Other DBs
NCBI-GeneID:
112288566
NCBI-ProteinID:
XP_024388620
UniProt:
A0A7I4A9D6
LinkDB
All DBs
Position
11:complement(11588841..11604073)
Genome browser
AA seq
1925 aa
AA seq
DB search
MALFGIQCSYVTEECLKEWKTTNTARKLKGAVSAARFVFELCQTLVLGELPLTKCRVALD
AVNLAEPASKDGTASLLADTIAHLGQELTVPGELRSRLVELAKWLVDSGLIPVRLLQERC
EAEFLWEAEMIKIKAPDLKSKEVRVNTRLLYQQTKFNLLREESEGYAKLLTLLSQRGPDG
LAHEKAPAVISAIKSLIGHFDLDPNRVFDIVLECYELQPDNSSFLELIPLFPKTHTTHIL
GFKFQFYQRPDVEDPAPDGLYRLAAALVKANCIELDSILAHMTPKDEEALQQYEEITKKR
MEEANRIGKINLAAIGKDLMEEEKPGDVTIDLYSALDMESNSLLERSDELSSNQKLGLLT
GFLHVNDWPHAQVLFERLAPLHPVAHEQISTGLIRAIENAIGPYYSYVRPRYLSKLGNGN
VEVRPENAPELPKEVFRMLLCIGPYLHRNALLLQKVCRVLQGYYQAALSDVAYSTSMAIG
QSNGQTEKRHPRELLKEARMHVEEVLGASLLPSLQLLPANPAVGLAIWDVMSLLPYEARY
RLYGEWDKDDERIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKIAHANPMTVLRT
IVHQIEAYKDMIAPVVDAFKYLTQLEYDVLEYVVIERLAQCGREKLKDDGINVSDWLQSL
ASFWGHLCKKYPSMELRGLVQYLVNQLKRGEGIELILLQELMQQMASVEYTENVTDDQLE
ALAGGEALRYQASAFGVTKNNKALMKSTNRLRDTLLSKDEPKLAVPLLILIAQQRSFVVV
TAEASYIKVVSEQFDRCHGTLLQYVEFLLSAVTPLYAYAQLIPSLEDLVQKYHLEAEVAF
HIYRPIMRLFKPHKSFALGWPADVTKPSTEGQGKDDSVTVTSELTLDLGLNQKSVKWSDL
LEVIKTMLPNKAWMSLSPELYTTFWGLTHLDIYVPRKRYEAEILKQRIALKALEENSDNS
HAAIAKRKKDKEKIQEVLDRLSSEYQKQEANAAAVHQRLVREKDGWLASCSESLKINMEF
LQRCIFPRCVMSMMDAVYCARFVQTIHSLGTPFFNTINHIDALICKTLLPMICCCTEYEA
GRLGRFLCETLKMAYHWKSSEQVYEKECGNMPGFATFYRDPNSARVTFEQYVRVHWKWNS
RLTRLLIQCLESEEYMEIRNGLTVLTKIASVFPVMKKSGANLERRVLKIKGDEREDLKVL
ATGVAAALASRKNAWVPEEEFTMGFVELKPLTAKAGTQRASSPTASSAVSAEVVAISSKE
TGNSKPETVKSVNKTDSPGTLPATTKADSSSKGSLLSAKAPPFVPSASSNTGKSTVSYDG
IPPANSSRSFAQSSTRSAADAQSRGVQANQAATVAKGEEATFNLSKTSNAADPEVGRSSA
RRPSMSASHTSMKDETASNRATAATSPGKPEREVRSEPGGSSRSRTSSAAVNASNGSAGG
TASGSVKAQATVFSRGGERGNQDGGSRRTSDLKSDSSKVAEPDIKPGDREQKKPEANDTS
TKGPASKSPVQREDTSATRLGSGEELVRIREKRFASQDDTERGQKRRKGPHGSSDNKAEA
GELVRPSERERFVDQRMAERDSSRAHDIFEKGPQDRTLERPRDRSNLRGAERAVDRGERD
SRPTERVPDRLDRDRGDNYTSDRHRDRSIEIFGRERSLDRNLDRVTDRVFERGSERIRDD
RVKDERIRQRHSDLPGEQPHPDDRYPMQNLPQRLPPPPPYPPNTDGLNRIPVEEAPQGRP
GRGVQIGLSPRPHEKLDKRRPDDSGGLEEPRKRRDDDARNRKRMDDREMQALKVDQDRER
AKEKVDQMKDEDLGSGSGKRRRKWRDPSAANEMLSFAPAGPLMTGPASQYEGRDRERKGG
LLPTRGAPHMDDTSYDKGPSSGRVHGKDGSKASRREHEHARSIDRDWEEEKRPRAEVKSR
RHHRK
NT seq
5778 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcttcggtatacaatgctcctacgtgacggaggagtgtttgaaggaatggaaa
actacgaatacagctcgcaagttgaagggtgcggtttctgctgctcgatttgtgtttgag
ctctgccaaaccctggttcttggggagctaccactcacaaaatgccgagtcgcactggat
gcagtgaaccttgcggagcccgcaagcaaggatggaaccgcatctcttttagcagatacc
atcgctcatttaggccaagaacttacagttcctggtgaacttcgaagtcgactcgtagaa
cttgcaaagtggttggtggattcaggtttgatacctgtcaggttgctgcaagaacgatgt
gaggcggagtttttatgggaagccgagatgattaaaattaaagcgccggatttgaaatcc
aaagaggtcagggttaacacaagacttctataccaacaaacaaaattcaaccttttgcga
gaggaaagtgaaggatatgcgaaactgttgacattgcttagtcaacgaggtccggatgga
ctagcgcatgaaaaggcaccagcagtcatcagtgcaatcaagtcgttgatcggtcatttt
gatctggacccaaatcgtgtctttgatattgttttggaatgctatgagctgcaaccggat
aacagttcatttttggagctaatccctctttttcctaagacgcacacaacgcatattctt
gggtttaagttccaattttaccagcgaccggatgttgaagatcctgcaccagatggcttg
tacagattagcagcagctcttgttaaagcaaattgcattgaactagatagcatattagca
catatgacacccaaggatgaggaggctttgcagcaatacgaggagatcacaaagaaacga
atggaggaggccaatcggataggtaaaatcaacttagctgcgattggaaaggacctgatg
gaagaggagaaacctggtgatgttacaatagatttatattcagcgttggacatggagagc
aattctttattagagagatctgatgaactctccagcaatcaaaagcttggtctccttact
ggatttctacatgtaaatgattggccccatgcacaagtactatttgaacgccttgcacct
ttgcatccagtagctcatgaacaaatttccaccggccttatcagagctattgagaatgca
attggtccttactattcatatgttagacctcgttatctgtcgaaattgggcaacgggaat
gtagaagtacgaccagagaatgctccagagcttcccaaggaagtttttcgaatgcttctg
tgcattggcccttaccttcatcgcaatgctcttcttttgcaaaaggtatgtagagtattg
caaggttactaccaggcggcgttgtcagatgtggcttattcaacttcgatggcaattggt
caaagtaatggacaaacagagaaacggcatccacgggaattgctgaaggaggctaggatg
cacgttgaggaggtcttaggagcttctcttctaccatcgctgcagctacttcctgcaaat
ccagcagttgggcttgccatctgggacgttatgagccttcttccgtacgaggcgaggtat
cgactttatggagaatgggataaagatgatgagcgtattccaatggttttggctgctcgc
caaactgctaagttggatacaaggcgtatattgaagcgacttgcgaaagaaaacctgaag
cagctaggtcgaatggtggccaaaattgctcatgcaaatcccatgactgtccttcgcact
atagttcaccagattgaggcctacaaagacatgattgcgccggttgtggacgcttttaaa
tatttaacacaactggagtatgatgtgttggagtatgtagtcatcgagcggctagcacaa
tgtgggcgtgaaaagctaaaagatgatggaattaatgtatcagattggttgcagtcgctt
gcttctttctgggggcatttatgtaagaaatacccgtccatggagttgcgtgggcttgtt
cagtatcttgtaaatcaactcaaacgtggggaaggcattgagctaattctgcttcaggag
ttgatgcagcagatggctagtgtagagtacaccgagaatgtgactgatgaccagctggaa
gccctggctggtggagaggcattacgatatcaagcatcagcgtttggtgttactaaaaac
aataaggcattgatgaagtccacaaacagactgcgagacacgttgctttcaaaggatgaa
cccaagctagccgtacctttgcttattttgattgctcagcaaagatcatttgtggtggtc
actgcggaagcatcctacatcaaagtggtcagtgaacagtttgatagatgccatggcact
ctactccagtatgtggaattcttattgagcgctgttactcctctttatgcttatgcacaa
ctcattccgtccctcgaagatcttgtacaaaaatatcatttggaggctgaggttgctttt
catatttacaggccaatcatgaggttgtttaaaccacacaaatcttttgccttgggttgg
cctgctgatgtcacaaagccttcaactgaaggtcaagggaaggatgattcggtcactgtg
acatctgagttgacattggaccttggtttgaaccaaaagagtgtcaagtggtccgatctg
cttgaagtgataaaaaccatgcttccaaacaaagcatggatgagcctttctccggagctc
tacactaccttctggggtttgacccatttggatatttatgtaccgcgaaaaaggtatgaa
gcagaaatattaaagcagcgaattgcacttaaggcgctcgaagagaactcagataattcg
catgcagctattgcgaagaggaaaaaggacaaagaaaaaattcaggaagttcttgacaga
ctttcatctgagtaccagaagcaggaagcaaatgctgcagctgtgcatcagcggttggta
agagagaaagacggatggttagcttcttgttctgaatcgttgaagatcaacatggaattc
ttacaacgttgtattttcccaagatgcgtgatgagtatgatggacgccgtatactgtgca
agattcgtgcagactatccatagtcttggaactccgtttttcaacacaattaatcacatt
gatgcccttatctgtaaaacattgttaccaatgatctgttgctgcactgagtacgaggcg
ggcaggcttggtcgatttctatgtgaaaccctaaagatggcttaccattggaagagctcc
gaacaagtctatgagaaggaatgcggcaacatgccagggtttgctactttttaccgggat
ccaaatagcgcacgcgtgacttttgagcagtacgttcgggttcattggaagtggaactca
cggttgacgcgcttgcttattcaatgcttagaatctgaggagtacatggagatacgaaat
ggactcaccgttttaacaaagattgctagcgtgttccccgtgatgaagaagagtggagcc
aacctcgaaagaagggtcctaaagatcaaaggagacgagcgggaagatcttaaggttttg
gccactggtgttgcagctgctctcgcttcacgcaagaatgcatgggttcctgaagaagaa
tttacaatgggtttcgtcgagctaaaaccactcaccgcaaaagctggtacccaacgagca
tcgtcccctactgcttcctctgcagtatccgccgaggttgtagcaatttcatctaaagaa
acaggtaactctaaaccggaaactgttaaatctgtaaataaaacagattcgccaggaacg
ttacccgctacaaccaaggccgatagttccagcaaaggcagtttactctcagccaaggct
ccaccctttgtgccctctgcttcgagtaatacaggaaagtcaacagtttcttatgatggg
ataccccctgctaattccagccgcagttttgcgcaaagttctactagaagtgcagcagat
gctcaatctcgtggagtacaagcaaatcaggcggcgactgttgctaaaggggaggaagcg
accttcaatctttcgaagacatcaaatgctgctgatcccgaggttggtagatccagtgct
cggagaccatctatgagtgcctcgcatacttccatgaaggatgaaactgcatcgaaccga
gcaacagcagctacctctccaggaaagcctgagcgggaggtccgctctgagcctggagga
agttcacgttctcgcacctcatcagcagcagtgaatgcaagtaacggcagtgccggtggt
accgcaagtggttcagtgaaggctcaagctaccgtgttcagcaggggaggggaaagaggt
aaccaggatggcggatctcgtcgcacttcagatctaaaaagtgatagtagcaaagtcgcc
gaacctgacattaaaccgggagatagggaacagaagaaacctgaagcaaatgatacgtcc
acgaaggggccagcatcaaaatctccagttcaaagagaagacactagtgccacgaggtta
ggttcgggagaagaactggtaaggatcagagagaagaggtttgcatcacaggatgatact
gagcgtggacaaaaacggcgaaaaggaccgcatggtagtagtgataataaggcagaagct
ggagaacttgtgcgtccttccgaaagagagcgctttgttgatcagcgaatggcggaacgg
gattctagtcgcgcacacgatatttttgagaagggaccacaagatcgtacgctggagaga
ccacgtgacaggagcaatttaagaggggcagagagagcagttgatcgtggtgagcgtgac
tctcggcctacagagcgggtaccggacaggttagacagggaccggggtgataactacacc
agtgaccgtcacagggacaggtcgatcgaaatttttggaagagagagatctttggataga
aatttagacagggtcactgatcgcgtatttgaacgaggcagcgagaggataagagatgac
agggtaaaggatgaacgaataagacaaagacatagtgacctacccggagagcaacctcat
ccagatgaccggtatcccatgcagaatctgcctcagaggctgccccctcctccaccatac
cctccaaacactgatggtctaaacaggattccagttgaggaggcaccgcagggtcgacca
ggtcgaggtgttcaaatagggctatcaccacgtccacatgaaaagctggacaagaggcgt
ccagatgatagcggaggtctggaggagcccagaaagaggcgggatgatgacgcccggaat
cgaaaacgcatggacgatagggaaatgcaggctctcaaggtggatcaagacagagagcga
gcgaaagagaaggtagatcagatgaaggacgaagacctgggttcaggttcaggaaagcga
cggcgtaaatggcgtgacccatcggcagcgaatgaaatgttgagctttgctcctgcaggt
cctcttatgaccggccctgcctctcaatacgagggtcgtgatcgggaaagaaagggtggt
ctgctaccaactcgtggagctccccacatggatgatacctcctatgacaagggtccaagc
agtgggcgtgttcacgggaaagatggctccaaagcatcaagacgagagcacgagcatgcg
aggtctattgacagggattgggaagaggaaaaacgacctagagcagaagtgaaatcacgg
cgacatcaccgcaaataa
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integrated database retrieval system
