Physcomitrium patens (spreading earthmoss): 112288679
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Entry
112288679 CDS
T01041
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03013
Nucleocytoplasmic transport
ppp03015
mRNA surveillance pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112288679
09122 Translation
03013 Nucleocytoplasmic transport
112288679
03015 mRNA surveillance pathway
112288679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112288679
03041 Spliceosome [BR:
ppp03041
]
112288679
Enzymes [BR:
ppp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112288679
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112288679
Spliceosome [BR:
ppp03041
]
Complex C
Other components
EJC/TREX
112288679
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112288679
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
112288679
NCBI-ProteinID:
XP_024388918
UniProt:
A9SV98
LinkDB
All DBs
Position
11:12453951..12458453
Genome browser
AA seq
425 aa
AA seq
DB search
MGDSYPETEELLDYEEEEEAAPDAVAAKTNGETVKKGYVGIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVTGQVAALVLCH
TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKDLLKNECPHIVVGTPGRILGLAR
DKDLSLKSVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKR
FMQDPMEIYVDDEAKLTLHGLVQHYIKLGEVEKNRKLNDLLDALDFNQVVIFVKSVSRAA
ELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVIN
YDMPDSADTYLHRVGRAGRFGTKGLAITFVASPSDSDVLNQVQERFEVDIKELPEQIDTT
TYMPS
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgggcgattcctaccccgaaactgaggagttgctcgactacgaggaggaggaagaagcg
gcgcccgatgccgttgcggcgaagaccaacggcgagaccgtcaagaagggctacgtcgga
attcacagctccggttttagggactttcttttaaagcccgaacttcttcgggctattgtc
gattgtggttttgagcatccatctgaagtccaacatgagtgcataccacaggcgattctc
ggaatggacgttatttgccaagccaagtcaggaatggggaagactgccgtttttgtgctt
tcaactcttcagcagattgagcctgtcacgggtcaggtcgctgcacttgtcttgtgtcac
acccgagagctggcttaccagatttgccacgagtttgaacgattcagcacttatcttcca
gacattaaggtggcggttttctatggcggtgttaatatcaaaacacataaagatctacta
aagaatgagtgtcctcacatcgtcgtgggtacaccaggccgtattctgggtttagcaaga
gataaagatttgagtttgaaaagtgtgaggcacttcattcttgacgagtgtgacaaaatg
ttggagtcacttgacatgcgaagggatgtacaggaaatttttaaattaactcctcacgac
aaacaagtaatgatgttctctgctacattgagtaaagagatacgacctgtctgcaagcga
tttatgcaagatcctatggagatctatgtggacgacgaagcaaaactcaccctgcacgga
cttgttcagcattatatcaagttaggtgaggtcgagaagaatcggaaactcaacgacctt
ctggacgctctagatttcaatcaggtggtgatcttcgtcaaaagcgtcagtcgtgctgca
gagttgaataagcttctggtggagtgcaacttcccttccatctgtatccactctggcatg
tctcaagaggaacgattgacacggtacaaaggtttcaaggaagggcacaagcgtatactt
gtggcaactgatcttgtgggccgtggcattgatatcgaacgtgtcaacattgtcatcaac
tatgatatgccagattctgcggacacatacttgcaccgagtcggtagagcaggtcgattt
ggaacgaagggacttgctatcacctttgtggcctcgccttctgattctgatgtcctcaac
caggtgcaagagcgctttgaggtggatattaaggagctgcctgagcaaatcgacacaact
acctacatgccatcatga
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