Physcomitrium patens (spreading earthmoss): 112288757
Help
Entry
112288757 CDS
T01041
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03013
Nucleocytoplasmic transport
ppp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112288757
03015 mRNA surveillance pathway
112288757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112288757
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112288757
mRNA cycle factors
P-body specific factors
112288757
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
LRR_R13L1-DRL21
Glycos_transf_N
Motif
Other DBs
NCBI-GeneID:
112288757
NCBI-ProteinID:
XP_024389053
UniProt:
A0A2K1JVF7
LinkDB
All DBs
Position
11:13248282..13257714
Genome browser
AA seq
1253 aa
AA seq
DB search
MGTKEKAADAAQQEGDRAEGVEMSEGGGGGGGDAAHDDDDHGGEAGHRSKDENEEAIARA
EELKKSAEAKHLLRQANLAPERPDASFFKTLDSSIKRNTAVIKKLKQINEEQKEGLLEEL
RVVNLSKFVSEAVTAITDAKLKSSDINAAVQVCSLLHQRYKDFAPTLLAGLLKVFFPAKG
DEIDGDRSSRAMKKRSTLRLLMELYFCGVFEDGSMFISIIKDLAGSEHLRDREATQTNLS
LLVSFARQGRGLLGLPLNGQDGQDELYKELSMSNDQKKLLRKMFQSFLDAVVELLQTEHG
ALRQLEQENARMLNAKGELSEENATAYEKLRKSYEHLFRNISSLAEAIDMQPPVMPEDGH
TTRVTSGDDGPSQATGKEPASPEPIWDDEDTRSFYENLPDLRAFVPAVLLGEAEPKGVAE
ASSKAAEQVEPEQGVGSALDVLDVLETEPQVSETVPTAPDDKSSFSVSEKAKDKDKDDKD
RNRDVEKDKTKEKDKESEKKADKESEKEKVKGVEGASLDSLLQRLPGCVSRDLIDQLTVD
FCYLNSKSSRKKLVRTLFNVPRSSLELIPYYSRMIATLSTCMKDVAPMILQLLEEEFNFL
MNKKDQMNIETKIRNIRFLGELAKFKVASPGLIFSCLKSCLDDFTHHNIDVACNLLETCG
RFLYRFPETSLRMGNMLEIIMRLKNVKNLDARHSTLVENAYYQCKPPERSARVSKVRPPL
HQYIRKLLFADLDKTTIERVLRQLRKLPWSECETYLLKCFMKVYKGKYSQVHLIASLTAG
LSRYHDAFAVSVVDEVLEAIRVGLELNEYGMQQRRIAYMRFLGELYSYRLIDSPVIFDTL
YLIIFFGHGTSEQDVLDPPEDCFRLRMVITLLETCGQFFDRGSSKRRLDRFLLYFQRYVL
SKGVIPLDVEFDLQDLFADLRPKMVRYATYDEANQALLELEEVDRNLAASEKDRSSRPLN
PSTQGDGEAHVNNPGSEYVKDAQNIGAAPLGTRASGIHGAGLADDADSESETESGSMEAD
GQEEEEELEEDKYPDHDDEGDDELEVEEMEGGADTAGSEEEEKVKVMQKKMPETDPAEEA
EFDREYRALMQESIDSRKLEMRSRPTLNMTIPLNLFDSKDHGRSGGTDIESGDEVVDDQT
SGTSVQFRVLVKKGNKQQTKQLRIPRECSLVQSTKQKEAAELEEKQDIKRLVLEYNERDE
EDRAGAAPQPMNWATHQGAPGLGRGRGHWGEGGGRLGNARQRRPIAVGYGRRR
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atgggcaccaaggagaaagcggcggacgctgcacagcaggaaggggacagggcggaaggc
gtggaaatgagtgaaggtggtggtggtggtggtggggatgctgcacatgatgacgatgat
catggcggtgaagccggtcatcggagtaaggacgaaaatgaggaagcaattgcgcgtgca
gaagagctgaagaagtctgctgaggctaagcatttgttgcgtcaagctaatttagcgccg
gaaagaccagatgccagcttcttcaaaacattggattcaagcatcaagcgtaatacagca
gtaattaagaagttgaagcagatcaacgaagagcagaaagaagggttgcttgaggaactt
cgggtcgtcaatttgagcaagttcgtaagtgaagcagtgactgcaattacggacgcgaag
ttgaaaagttcagacattaatgcagctgtgcaggtctgttccttacttcatcaaagatac
aaagactttgcgccaacacttttggcagggctactgaaagttttctttcctgctaaaggc
gatgaaattgatggtgatcgtagctcacgggcaatgaagaaacgcagcacactcaggctt
ttgatggagctttatttctgtggagtatttgaggatggaagtatgtttattagcatcatt
aaagacctcgctggtagtgagcatttgagggaccgcgaagccactcagaccaatctttct
cttttggttagcttcgcaaggcaaggtcgaggccttcttggtcttccgctgaacggtcaa
gatggacaagatgagctgtataaggagctaagcatgagtaatgatcagaagaaacttttg
cgtaagatgttccagtcatttcttgatgcagtggtggaactcctgcagacagagcatggg
gcattgcggcagctggaacaggagaacgcacgaatgctcaatgcaaagggagagctgagt
gaagaaaatgcaacggcatacgaaaagctccgaaaatcttatgaacacctctttcgcaat
atctcttcactcgcagaagcaatagatatgcaacctccagtaatgccagaagatggccat
accacccgcgttacctcaggagatgacggtccctcccaagcgactggaaaggaacctgcc
tctccagagcccatttgggatgatgaagatactcgttctttctatgaaaacctgcctgat
ctacgagcttttgtcccagcagtgttacttggagaggctgaaccgaagggagtagcagag
gcttcatcaaaggcggcagagcaagtggaaccagagcaaggtgttggttcagcactagat
gttttagatgttctcgaaacagaacctcaagtttcggaaacagtaccaacagccccagat
gataagtcatctttcagtgtctctgagaaggccaaggataaagataaggatgacaaagac
agaaatcgagatgtagagaaggacaagacaaaggagaaagacaaagaaagcgagaagaag
gctgacaaggaaagtgagaaagaaaaggtgaaaggcgttgaaggtgctagtcttgacagt
cttcttcaaaggcttcctggctgtgttagtcgagacctgatcgaccaactgacggtagat
ttctgctatttgaactcaaaaagcagccgaaagaagctggtgcgcactcttttcaacgtt
cctcgaagttctttggagcttataccatattattctcggatgattgctaccctgtctaca
tgcatgaaggatgttgctccaatgattctacaactgcttgaagaggaatttaattttctg
atgaacaaaaaggaccaaatgaacattgaaaccaagattaggaatattcgcttcttaggt
gaacttgcgaagtttaaggtggcatcgccaggccttatattcagttgtttaaagtcatgc
ttagatgattttacacatcacaatattgatgttgcctgcaatttgttagaaacttgcggc
cgctttctgtatcggtttccagagacatccttacgtatgggaaatatgctcgagatcata
atgcgcctcaaaaatgtcaagaacctggatgcccgacatagtactcttgtagaaaacgct
tattatcaatgcaagcctcctgaaaggtctgctcgtgtttctaaagttcgtccaccctta
catcagtacatccgaaaactactgtttgcggatcttgataaaactacaatagagcgggtt
ctacggcagttgagaaagcttccatggagcgaatgtgagacgtatttgttgaaatgcttc
atgaaggtctacaaaggaaaatacagccaagttcatctaatagcctctttaactgccggc
ctaagccgatatcatgatgcgtttgcagtttctgtggttgatgaggttctagaagctatt
agagtggggttagagttgaatgagtacgggatgcagcaacgacgcatcgcatacatgaga
tttcttggagaattgtatagctaccgtcttatcgactctcctgtcatctttgacactctc
tatctgatcatcttctttggtcatggaacttcagagcaagatgtgttggatcctccagaa
gactgttttcgacttcgaatggtcatcacgcttcttgagacctgtggacaattcttcgat
cgaggttcatccaagcgtcggcttgatcgcttcctactttatttccaaagatatgttctt
agtaaaggagttattcctttggacgtggaatttgatctccaggatctttttgcagatctt
cgtccaaagatggttcgatatgctacgtatgatgaagctaatcaagctttgcttgagttg
gaggaggttgatcgtaatttggcagcttctgagaaagatcggagttctcgtccgttaaat
ccaagcacgcaaggagatggagaggcgcacgtgaataatcccggatcggaatatgtcaag
gatgcccaaaatattggagccgcaccacttggaacaagagcttcaggaattcatggagca
ggattagccgatgatgcagatagtgaatcagagacagaaagtggaagtatggaagctgat
ggccaggaggaagaggaggagctggaagaagacaagtatccagatcatgatgatgagggt
gacgatgagctggaagtagaggagatggaaggtggggctgacactgcaggttcagaggaa
gaagagaaggtgaaagtgatgcagaagaagatgccagaaacagaccctgccgaagaagct
gaatttgatcgtgaatatcgcgctcttatgcaagagagtatagattctcgtaaacttgaa
atgcgatctcgtccaactctgaacatgactatacctcttaacctgtttgattcgaaggat
cacgggcgaagtggcgggacggatatagagtcaggtgacgaggtagtggacgatcaaaca
agtggaacaagtgtacagtttcgagttttagtgaagaaagggaacaagcaacagacgaaa
cagctccgtatcccacgtgaatgttctcttgttcagagtacgaagcagaaggaggcagca
gaactggaagaaaaacaagacattaagcgactagtcttagagtataatgagagggatgaa
gaagatcgtgcaggtgctgcgccacagccgatgaactgggcaacacaccaaggagcacct
ggtttgggccggggcaggggacattggggagaaggaggcgggagattaggaaatgctagg
cagagacggccgattgcagttggctatgggcgacggcgttag
DBGET
integrated database retrieval system
