Physcomitrium patens (spreading earthmoss): 112288829
Help
Entry
112288829 CDS
T01041
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112288829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112288829
03012 Translation factors [BR:
ppp03012
]
112288829
Enzymes [BR:
ppp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112288829
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112288829
Translation factors [BR:
ppp03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
112288829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
R3H
HA2_C
Helicase_C
OB_NTP_bind
DEAD
Ank_2
Ank
AAA_19
HA2_N
nSTAND3
ATPase
Ank_5
ResIII
AAA_16
Ank_3
AAA_22
AAA_7
Sigma54_activat
PhoH
Sigma54_activ_2
Ank_4
Rad17
AAA_23
Motif
Other DBs
NCBI-GeneID:
112288829
NCBI-ProteinID:
XP_024389232
UniProt:
A0A2K1JUF0
LinkDB
All DBs
Position
11:complement(7328815..7337367)
Genome browser
AA seq
1161 aa
AA seq
DB search
MEPWRERRGGGRGGGGRGTHHAGRRPVAEADRISIVDRLNQFKASNEEELIFEADLSNHD
RAVVHDTCKKLGLKSKSRGKGDDRRVAVFKPSQRTGIKPASATPLTFSPASYEILADLFQ
RHPPVEDELLANKWEPPAITSTSSSAVSKKESNRHYNRGKASKQWTMNPGDVVRQAAALA
SRIQKQPALQKIAEKRSTLPIASFKDEITAVVDKHQVVLIAGETGCGKTTQVPQYILDHM
WSQNKPCRIICTQPRRISATSVAERIAAERGENVGNTVGYQIRLESKGGRHSSLMFCTNG
VLLRKLVGSGRLKLKENESVLDESEEFSGLDATHVIVDEIHERDRNADFLLIVLRDLLAL
KPNLRLILMSATLDADLFSSYFNNCPVVRVPGFTFPVQTYYLEDVLALTENQQSSNQNGR
NSEKKLSLTEEDVQSMDEAIQLAWLEDDFETLMDTIEEFPRLNLCNYKHSLTGATALMVS
AGKGRVEDVKLLLSLGADISAAANNGHTAFDWAKNNGQEEVVSILTEHMVKVQQAQFQAA
ETALLQNYQMSADQDEIDVALIERLLHRLHEAAGERLDTQGAVLVFLPGWEDISRLRECL
QVSPIFGNPSRFLLLPLHSLVPSSEQRKVFQSPPSGVCKIVLATNIAETAITIDDIVYVI
DTGRMKEKSYDPYSNVSTLQTVWISKASAKQREGRAGRCQPGVCYHLFSRLRMQALPEFQ
LPEIKRTPLEELCLQVKLYEPHGRIAEFILRALDPPLEIAVRNAVTLLQDIGALTSDELL
TEMGKQLGSLPVHPSTSRMILLAILLNCLDPALTVACAAGFRDPFVLPLHPYQKKQAQHA
RQELAAMYGGSSDHLSIVAAFDRWENARVNGQESNFCSRYFVSGGTMFQLAGMRQQLQGE
LVQKGFIKMEPHPCSLNARDPGIVRAVLAAGMYPMVGNLLPPLPGSAKAIVQTARGEKVR
IHPHSISIQPNELASMDQTKLNQLLVVFDEVTRGEAQVYVRKCTLITPHPLILLSTEMVI
TFPDGKESAALEPSSVGDDISDDDYDSDEDEGAVKERPSREVPAQHRLMSSADALVSVVV
DRRFYFSSTALDGAQLFVLRSRMNAALNFKVTQPRLYLPAVLADSVHAIACILSFDAMPA
MALPSTSHRGSSRSRGAHHRF
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggagccgtggcgagagagaagaggtggagggaggggagggggtgggagagggactcat
catgctggtcgacgtccggtcgctgaggctgatcggatcagtatcgtggacaggcttaac
caattcaaggctagcaacgaggaagagctaatttttgaggcggatcttagcaatcatgac
agagctgtggtgcacgacacttgcaaaaagctgggattaaagtccaagagtcgcggaaag
ggagacgatcgacgtgttgcagtttttaaaccatcacagcgaacaggaatcaaacctgca
tcggcaactcccttgaccttctcaccagcgtcctatgaaattttagcggatctatttcaa
cgacaccctcctgtggaagatgaactacttgcaaataaatgggaacctccagcaattact
tcaacatcgagtagtgccgtgagtaagaaggaatctaatcgtcactacaatcgtggaaag
gctagcaagcagtggacaatgaatccaggtgacgttgttcgacaagcagctgcactagct
tcacgaatacagaagcaaccagctcttcaaaagattgctgaaaagaggtcgacactacca
atcgcttccttcaaggatgaaattacagctgttgtggataaacatcaggtagttctcatc
gcaggagaaactggctgtggaaaaactacccaggttccacaatatattcttgatcacatg
tggtctcaaaacaagccctgcaggattatttgcactcaacctcgacgtatttcagccact
tcagttgctgagcgaatcgctgccgagcgtggggaaaatgttggtaatacagttggttac
cagattcgtttggaatcaaaaggaggcaggcactcctctctcatgttctgtacaaacggt
gtgcttttaaggaagcttgttggatccggtcgtcttaagttgaaggaaaatgaatctgtt
ttggatgaatcagaggaattcagtggacttgatgccactcatgtcatagtcgatgaaatc
catgaacgtgatcgaaacgctgatttcttgttgattgtgcttagggacctgcttgctttg
aagccgaacttgcgcttgattttaatgagtgccacgctggacgctgaccttttttcaagt
tacttcaacaattgcccagtagttcgagtaccaggttttacatttccagtgcagacctac
taccttgaagatgtgctggccctgaccgagaaccagcaatctagtaatcaaaatggtcgg
aatagtgaaaaaaaattatcccttactgaggaggacgtgcagagtatggatgaagcgatt
caattagcatggctggaagatgattttgaaacactcatggatacaattgaggaattcccg
aggttaaacctttgtaattacaagcattcactaactggagcaactgcactaatggttagt
gctggaaagggacgagttgaggatgttaagctgctattatctcttggggctgacatatct
gctgctgcaaataatggtcacacagcttttgattgggctaaaaacaatggtcaagaagag
gttgtctcaattttgaccgaacacatggtgaaagtgcagcaagcacagtttcaggcggca
gaaactgctctgttgcaaaattatcagatgtcagcggatcaggatgagattgacgtggcc
ttgattgaacgcttgctacatagacttcacgaggcagccggagaaagattggatacccaa
ggggctgtgttggtcttcttacctgggtgggaggatatttctaggcttcgtgagtgtcta
caggtctcccctatctttggtaatccctccagatttttattattgcctttacattcgctg
gtgccttcaagcgaacaaaggaaagtgttccagtctccacccagcggagtttgcaagatt
gttctagctaccaacattgctgagactgcaattactatcgatgatattgtctatgtaatt
gatactggtcgaatgaaagagaagagttacgatccgtatagcaacgtgtctactttgcag
accgtctggatatcaaaagctagtgctaagcaacgtgaagggagagcgggacggtgtcaa
ccaggtgtctgctatcatttgttttccagattgagaatgcaggctctgcctgagtttcaa
cttcctgaaatcaagcgaacacctcttgaggaactttgcctgcaggtaaaactgtatgaa
cctcatggacgaattgcggagtttattttaagagcgcttgatccacctctagaaatagca
gtacggaatgcggtgacactgctacaagacattggtgctctcacctctgatgagttgctt
acggagatgggaaagcagctgggatcacttccagtccatccttccacaagcaggatgatt
ctcctagctatcctgcttaattgtcttgatcctgctctgacggttgcttgtgccgctggt
tttcgagatccctttgtccttcccctacacccttatcaaaagaagcaggctcagcatgca
cggcaggaactcgctgcgatgtatgggggctctagtgaccatctatccattgtggcagct
tttgatagatgggagaatgcacgagtcaacggccaggagagtaatttctgttcaagatac
tttgtgtcaggtgggacaatgtttcagctcgctggtatgaggcaacagctgcaaggcgag
cttgtacagaaaggttttatcaaaatggagccgcatccatgcagtttgaatgcgcgagat
cctggcattgtaagagcagtactggctgcaggaatgtatccaatggttggcaatttgcta
cctcctttacctggcagtgcgaaggccattgtgcaaacagcaaggggcgagaaagtacgg
attcatccacattcaataagtattcaaccaaatgagctcgcttccatggaccagaccaag
ctgaatcagctacttgtcgtttttgatgaagtcactcgcggagaagctcaggtgtacgtt
cggaagtgcacacttattactccacatcccttgattcttttatctactgagatggtaatt
acttttcctgacgggaaagaaagtgccgcgttagaaccaagtagtgttggggacgacata
agcgatgatgattatgacagtgatgaagatgaaggggcggtaaaagagcgacccagtagg
gaggtgcctgcacagcatcgtctaatgtcttctgcagatgcgcttgtttctgttgtggtt
gatcggcggttctacttcagttctacagctttagatggagctcaactttttgttctgcga
tcaaggatgaacgcagctctgaatttcaaggtgactcaaccgcggttgtatcttccggct
gtcctggctgactctgtgcacgccattgcatgcatactgtcttttgatgcaatgcctgcc
atggccttgccatccacaagtcaccgcgggtcctcgagatcaaggggagcacaccatcgg
ttctag
DBGET
integrated database retrieval system
