Physcomitrium patens (spreading earthmoss): 112289227
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Entry
112289227 CDS
T01041
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit D-like
KO
K07466
replication factor A1
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03030
DNA replication
ppp03420
Nucleotide excision repair
ppp03430
Mismatch repair
ppp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112289227
03420 Nucleotide excision repair
112289227
03430 Mismatch repair
112289227
03440 Homologous recombination
112289227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppp03000
]
112289227
03032 DNA replication proteins [BR:
ppp03032
]
112289227
03400 DNA repair and recombination proteins [BR:
ppp03400
]
112289227
Transcription factors [BR:
ppp03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
112289227
DNA replication proteins [BR:
ppp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
112289227
DNA repair and recombination proteins [BR:
ppp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
112289227
MMR (mismatch excision repair)
112289227
DSBR (double strand breaks repair)
HR (homologous recombination)
112289227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
tRNA_anti-codon
DUF223
CDC24_OB3
zf-RRPl_C4
RMI1_C
zinc-ribbons_6
Motif
Other DBs
NCBI-GeneID:
112289227
NCBI-ProteinID:
XP_024390039
LinkDB
All DBs
Position
1:15769467..15772962
Genome browser
AA seq
479 aa
AA seq
DB search
MTSVSLKSVETMSTVKILEGQGANMTPTKMGLSKRVYPILSLNPYQGNWTIKVRVTSKSP
LRTFKNARGDGNVFNVELTDEDGTQIQATMFKEAADKFYDVLQLDKVYFISKGSLRMANK
QYATVKNDYEMTLNSNSEIVEADIESSTFKLPSATYNFTKISDLGRHISSKRFVDVLGVV
QSVGPLTTVNRKSNNDEIPKRDIVLLDQSRQTVVLTLWNNMAVKEGASLADLIAESPILM
AKGLRLSDFQGVSLSSTMNTMVLINPVIPDANELRTWYEEDGRTASLTPAGASLPGGTNQ
NRSSFTDRAVLSDIIQPNVGEGKPMYFNVRAYISFIKPDQAMWYLACQTCNRKVVEQSSS
SYWCEGCQNHYDKCSRRYIMQAKLSDSSGEAWVSAFNEQAESLLGVSADNLSEMRNQAGD
DNQYQNAVRKAMWQPCVYRISAAQTEYMSEKRQRLTVRTVVPVDWVAESKHLLAKITKG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccgtgtcgctcaaaagcgttgagacgatgtcgacagtgaaaatcttggagggg
caaggtgccaacatgactccaaccaagatgggtctgtcgaagagagtgtaccctattctt
tcactcaacccgtaccaagggaattggacaattaaagtgagggtcacgagcaagagccct
ctcaggactttcaagaacgcacgtggagatgggaatgtcttcaacgttgagctcaccgat
gaagatggtacacaaattcaagccacaatgtttaaggaggctgctgacaaattctatgac
gttctgcaactggacaaggtatatttcatctccaaaggcagcttgcgtatggcgaataaa
caatacgctaccgtaaaaaacgactatgaaatgacgctcaacagcaattctgaaattgta
gaggcggatattgagagttctaccttcaaattgccttctgcaacatacaacttcactaag
atttctgaccttggtcggcacataagttccaagaggtttgtcgacgttttgggagtcgtc
cagagtgtggggcctttaacgacggtgaatcgtaaatccaacaacgatgaaattcctaag
cgagacatcgtgctcttggaccaaagtcgccaaacagtagttttgacgctttggaacaac
atggccgtgaaggaaggggcgtctttggcagacctgatcgctgaatcccctattctcatg
gctaaagggcttcgtctgagcgacttccaaggtgtatctctttcatccaccatgaatacc
atggttctcatcaatccagtcataccagatgcaaacgaactccgcacttggtatgaggag
gatggacggactgcttccttgactcctgctggggccagcctcccagggggtacgaaccag
aatcggtcctcatttacagaccgagccgtgctttccgatatcattcaacctaatgttggt
gaaggcaagccgatgtacttcaatgtgagagcgtacatcagcttcatcaagccagaccaa
gctatgtggtacttagcttgccaaacttgtaatcgcaaggtggtggagcagagcagttca
agttactggtgtgagggatgtcagaatcattatgataaatgcagccgcaggtatatcatg
caagccaagctatcggactcttcaggagaggcctgggtttctgcattcaatgagcaggca
gaatcactcctaggtgttagtgcagacaatctctccgagatgaggaatcaggccggcgat
gataaccaatatcagaatgccgtaaggaaggcaatgtggcaaccgtgtgtataccgcatc
agtgctgcccagacggagtacatgagcgaaaagcgacagcgactcactgtacgcacagta
gtgccagtcgactgggttgctgaaagcaagcaccttctggcgaaaataacgaaaggttga
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