Physcomitrium patens (spreading earthmoss): 112289279
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Entry
112289279 CDS
T01041
Name
(RefSeq) TATA-box-binding protein 2 isoform X1
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112289279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppp03000
]
112289279
03021 Transcription machinery [BR:
ppp03021
]
112289279
Transcription factors [BR:
ppp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
112289279
Transcription machinery [BR:
ppp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112289279
RNA polymerase III system
TFIIIB
112289279
RNA polymerase I system
SL1/TIF-1B
112289279
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
DUF3378
DUF4295
Motif
Other DBs
NCBI-GeneID:
112289279
NCBI-ProteinID:
XP_024390142
UniProt:
A0A7I4AEI9
LinkDB
All DBs
Position
12:3410308..3414444
Genome browser
AA seq
211 aa
AA seq
DB search
MAEAVLEGSQPVDLAKHPSGIIPTLQNIVSTVNMDCRLDLKKIALQARNAEYNPKRFAAV
IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFQAHFKDFKIQNIVG
SCDVKFPIRLEGLAYAHGHFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE
IYEAFENIYPVLTEFRKIQQWYVPSLPYIIS
NT seq
636 nt
NT seq
+upstream
nt +downstream
nt
atggctgaggcagtcttggagggtagccagcctgtggaccttgccaaacatccctccggc
atcattcctacgctgcagaatattgtctcaactgttaatatggattgtcgcttggattta
aagaaaattgccttacaggcccgaaatgctgaatataaccctaagcgttttgcagctgtt
attatgcgaataagggagccaaaaacgactgccctcatttttgcatctggtaaaatggtg
tgcacgggtgccaagagtgagcaacagtcaaagttggctgcaagaaagtatgctcgcatc
attcaaaagcttggctttcaagctcatttcaaggacttcaaaattcagaatattgttgga
tcatgtgacgtgaagttccctatccggctcgagggtttagcatatgcccatggtcatttt
tcaagttatgaaccagagttgttcccagggttgatatatagaatgaagcagcccaagatt
gtattgcttatcttcgtgtctggaaagattgtccttactggtgctaaggtaagggatgag
atttacgaggccttcgagaatatttatcctgtgttgacagagtttaggaagatccagcag
tggtacgtcccttctctgccttacatcatttcttga
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