Physcomitrium patens (spreading earthmoss): 112289600
Help
Entry
112289600 CDS
T01041
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112289600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppp03021
]
112289600
03036 Chromosome and associated proteins [BR:
ppp03036
]
112289600
Transcription machinery [BR:
ppp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112289600
Coactivators
SAGA/TFTC/STAGA complex
112289600
Chromosome and associated proteins [BR:
ppp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
112289600
STAGA complex
112289600
TFTC complex
112289600
SAGA complex
112289600
SLIK complex
112289600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_SPT8
Ge1_WD40
Beta-prop_HPS5
Beta-prop_VPS8
Beta-prop_DCAF12
PALB2_WD40
Beta-prop_NWD2_C
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
112289600
NCBI-ProteinID:
XP_024390702
UniProt:
A9STW4
LinkDB
All DBs
Position
12:complement(15392796..15395700)
Genome browser
AA seq
673 aa
AA seq
DB search
MEEEKVEQAVLAYLKSKGYRQAELAFHDEQQRLRHSGSQTSDTAIDSSIANPILFYAKSD
NDPNRYKEGYSKLRSWVYQSLDSYKNELLRILYPVFAHCYIDLVGKGFTQEARDFLQRFR
EDHEASHVRDIQKLEGVLSPQHLHESELVLTLRNNKQSVKMCQYSFELLLQYLHGTDSML
MLGIVNEHLNIHVLPGPPSALPKDDEVVAQGTLDYLNQKEIRWGALEDSLEDKFEKHNAA
ALLEKDMAGKKDGEGEDNKAKVDGKAGGPSNKKAKKDKASTAGPGTTAKSAGPGSAPRVK
AELPMPTMSEEAEKQVMEDFRKRARLGSNALPSVSFYSFINTHNSLNCASISSDGALVAG
GFSDSSVKVWDMAKLGEQKTIAGSVTQDKPPTNGFTETRETALEGSKSSYALLQGHAGPV
YAASFSPDSEFLLTSSADCTVRLWSMRLKTNLMGYKGHNFPVWDVQYSPVGHYFATASHD
RTARIWCMERMQPLRILVGHMSDVDCLQWHVNCNYVATGGTDNTVRLWDVQTGECLRVFN
GHCGTVLSLAMSSDGRYMASGDDRGAIFMWDLGSGQCVAPLMGHTSCVWTLAFSGEGSLL
ASGSADNTVRLWDVNASSKGSRSEEKLSATRHLRLLKTLPTKSTPVYALKFSRTNLLLAA
GAFSPSQSAKATT
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggagaaagtagagcaggcagtgttggcctacctgaagagcaagggttatcgg
caggctgagcttgcgtttcatgatgagcagcagcggcttcgtcacagtggctcacagacc
tcggacactgctatagactccagcattgccaaccctatcctgttttatgctaaatcagat
aacgatccgaataggtacaaggaaggctacagtaagcttcggtcgtgggtttatcagtcg
ttggatagttataagaacgagcttctgcggatactgtatcctgtgtttgcgcactgctac
attgaccttgtgggaaaaggattcactcaggaggcgcgagactttttgcagaggttcaga
gaggatcacgaagcttcccacgttcgagatattcagaaactggaaggtgtgttgtctccc
cagcatctgcatgagtcagaacttgtgctaactctgaggaacaacaaacaaagcgtgaag
atgtgtcagtattcttttgaattgttgctacaatatttgcacggtacggatagcatgctt
atgctgggcatcgtcaatgagcatttgaacattcacgttttgcctggtccaccgtcggct
ctgcccaaagacgatgaagtcgttgcacaagggacccttgactatttgaatcagaaggag
atccgctggggagcgcttgaggattcgttagaagataaatttgaaaagcataatgccgca
gcacttcttgagaaagatatggccgggaagaaagatggcgagggggaggataacaaggca
aaagttgatggaaaggctggaggacctagcaataaaaaggccaagaaggataaagctagc
acagctggtcctgggacaactgctaagtctgcaggccctggtagtgctcctcgtgtgaaa
gctgagcttcctatgcccaccatgtcggaggaggcggagaaacaagtaatggaggatttt
cggaaacgtgctcgtctgggtagtaatgccctgccgtccgtgagcttctatagcttcatt
aacactcacaatagtctcaactgtgcgtccatttctagcgatggtgcattagtcgccgga
gggttttccgattcatcggttaaggtttgggacatggcgaagctcggggagcagaaaacc
atcgcagggagtgttacacaggacaaacctcccaccaatggtttcacagagactagagag
actgcgcttgaaggttccaaatcgtcctatgcactccttcagggtcatgcaggacccgta
tatgccgccagtttcagcccagatagtgaatttttgctcacttcatctgctgattgcacc
gtgagactatggagcatgaggttgaaaaccaatttgatggggtataaaggtcataatttt
ccagtttgggacgtccagtacagtcccgttggccattattttgctacagcttcgcatgat
cggacagcgcgcatctggtgtatggagcgaatgcagccactccgcattttagttggccac
atgtctgatgttgattgcttacaatggcacgtcaattgtaactacgttgcgactggaggc
accgacaacacagtgcggctgtgggatgttcagactggagaatgtttgcgtgtctttaat
ggacattgtggtactgtcttgtctttggcaatgtctagcgatggtcgttacatggcctca
ggagacgaccgtggtgcaatattcatgtgggatcttgggtctggccaatgtgtggctcct
ttgatgggacacactagctgtgtttggaccttggccttcagcggcgagggttcactgctg
gcttcgggctctgcagataacacggttcggttgtgggatgtgaacgccagcagcaaaggt
tctcgctctgaagaaaagcttagtgcaacgaggcatcttcgcctcctgaaaactcttcca
accaaatcgaccccagtctatgcactcaagttttccaggacaaatttattgctagctgcc
ggagctttcagcccttcgcaatcagcgaaagcaacgacctga
DBGET
integrated database retrieval system
